RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ARHGEF39Q8N4T4 335 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 TMEM104Q8NE00 496 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 OR52I1Q8NGK6 324 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 RNF141Q8WVD5 230 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 WDR1O75083 606 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 MT-ND4LP03901 98 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 HOXC8P31273 242 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 TAGLN2P37802 199 aaKnown RBP18.51■□□□□ 0.55
UPF1-207ENST00000599848 LIPAP38571 399 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 CCR2P41597 374 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 OR8B3Q8NGG8 313 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 OR8B2Q96RD0 313 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 PLA2G3Q9NZ20 509 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 TAAR5O14804 337 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 PMP2P02689 132 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 ZNF83P51522 516 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 RPS25P62851 125 aaKnown RBP18.51■□□□□ 0.55
UPF1-207ENST00000599848 SORDQ00796 357 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 WIPI1Q5MNZ9 446 aaPredicted RBP18.51■□□□□ 0.55
UPF1-207ENST00000599848 OR8G2PQ6IF36 304 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 TP53I13Q8NBR0 393 aaPredicted RBP18.51■□□□□ 0.55
UPF1-207ENST00000599848 PLPP7Q8NBV4 271 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 PRR7Q8TB68 274 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 ADAM19Q9H013 955 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 FKBP11Q9NYL4 201 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 TAS2R16Q9NYV7 291 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 SLC23A1Q9UHI7 598 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 TMPRSS11DO60235 418 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 BSGP35613 385 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 SARGQ9BW04 601 aa18.51■□□□□ 0.55
UPF1-207ENST00000599848 TEX51A0A1B0GUA7 166 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 CD1EP15812 388 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 TNFAIP6P98066 277 aaPredicted RBP18.5■□□□□ 0.55
UPF1-207ENST00000599848 TCTE3Q8IZS6 198 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 GIMAP1Q8WWP7 306 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 NEIL1Q96FI4 390 aaPredicted RBP18.5■□□□□ 0.55
UPF1-207ENST00000599848 FYTTD1Q96QD9 318 aaKnown RBP18.5■□□□□ 0.55
UPF1-207ENST00000599848 NIPSNAP3BQ9BS92 247 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 CCR9P51686 369 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 XKR7Q5GH72 579 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 OR2Z1Q8NG97 314 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 PBOV1Q9GZY1 135 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 MYH13Q9UKX3 1938 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 TRAV38-1A0A0B4J264 116 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 A0A1B0GTQ1 180 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 SHC1P29353 583 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 RFC3P40938 356 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 SVBPQ8N300 66 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 FGF11Q92914 225 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 FUT7Q11130 342 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 ASCL5Q7RTU5 278 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 PELI3Q8N2H9 469 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 OSR2Q8N2R0 312 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 SAT2Q96F10 170 aaPredicted RBP18.5■□□□□ 0.55
UPF1-207ENST00000599848 OR2A5Q96R48 311 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 DIRC2Q96SL1 478 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 CFHR5Q9BXR6 569 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 DUSP15Q9H1R2 295 aaPredicted RBP18.5■□□□□ 0.55
UPF1-207ENST00000599848 AAMDCQ9H7C9 122 aa18.5■□□□□ 0.55
UPF1-207ENST00000599848 ZNF71Q9NQZ8 489 aaPredicted RBP18.5■□□□□ 0.55
UPF1-207ENST00000599848 HTR2BP41595 481 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 LYPD4Q6UWN0 246 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 ANKRD37Q7Z713 158 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 GPX8Q8TED1 209 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 GDF2Q9UK05 429 aaPredicted RBP18.49■□□□□ 0.55
UPF1-207ENST00000599848 UGT2A1Q9Y4X1 527 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 ZNF785A8K8V0 405 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 SPP1P10451 314 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 WDR74Q6RFH5 385 aaPredicted RBP18.49■□□□□ 0.55
UPF1-207ENST00000599848 MFSD4AQ8N468 514 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 OR2Y1Q8NGV0 311 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 HRH4Q9H3N8 390 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 TIAM2Q8IVF5 1701 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 MN1Q10571 1320 aaPredicted RBP18.49■□□□□ 0.55
UPF1-207ENST00000599848 ACTR3CQ9C0K3 210 aaPredicted RBP18.49■□□□□ 0.55
UPF1-207ENST00000599848 HEXA-AS1Q9H8Q6 139 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 TAS2R4Q9NYW5 299 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 OR2A25A4D2G3 310 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 CLDN12P56749 244 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 OLIG1Q8TAK6 271 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 FLVCR1Q9Y5Y0 555 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 SDK1Q7Z5N4 2213 aa18.49■□□□□ 0.55
UPF1-207ENST00000599848 B3GALT4O96024 378 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 SLC35B4Q969S0 331 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 CHST6Q9GZX3 395 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 NDUFB11Q9NX14 153 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 ATF1P18846 271 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 CLINT1Q14677 625 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 RHBDD2Q6NTF9 364 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 TUBG2Q9NRH3 451 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 PNLIPRP3Q17RR3 467 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 SLC25A26Q70HW3 274 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 DYNC2LI1Q8TCX1 351 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 DDOQ99489 341 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 TCFL5Q9UL49 500 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 ARRDC5A6NEK1 342 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 SOX18P35713 384 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 TMEM267Q0VDI3 215 aaPredicted RBP18.48■□□□□ 0.55
UPF1-207ENST00000599848 C4orf17Q53FE4 359 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 SOHLH1Q5JUK2 328 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms