RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 LYNX1P0DP58 116 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 SLC2A1P11166 492 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 PEX2P28328 305 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 PRKXP51817 358 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 RAD23AP54725 363 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 PRSS12P56730 875 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 DSCR9P59020 149 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 SELENOVP59797 346 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 RPS7P62081 194 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 GK2Q14410 553 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 SLC25A30Q5SVS4 291 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 LPCAT4Q643R3 524 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 ZNF786Q8N393 782 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 FAM81AQ8TBF8 368 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 MSL2Q9HCI7 577 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 CENPMQ9NSP4 180 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 ABCA1O95477 2261 aa16.58■□□□□ 0.25
SHKBP1-221ENST00000599833 ERICH4A6NGS2 130 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 SLC22A31A6NKX4 558 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 SLC16A6O15403 523 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 RP2O75695 350 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 DAOP14920 347 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 COL8A2P25067 703 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 GIFP27352 417 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 HTR1FP30939 366 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 ZNF81P51508 661 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 SNRPGP62308 76 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 GRB2P62993 217 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 ZNF92Q03936 586 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 CDK5R2Q13319 367 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 RIN1Q13671 783 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 GLYATL3Q5SZD4 288 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 LCN1P1Q5VSP4 162 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 CLEC2AQ6UVW9 174 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 GID4Q8IVV7 300 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 MAPK1IP1LQ8NDC0 245 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 TRUB1Q8WWH5 349 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 FAM168AQ92567 244 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 SPSB4Q96A44 273 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 REG4Q9BYZ8 158 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 GSX1Q9H4S2 264 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 FAM118AQ9NWS6 357 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 DNAJC27Q9NZQ0 273 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 NKX1-2Q9UD57 310 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 AASSQ9UDR5 926 aa16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 CGGBP1Q9UFW8 167 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-221ENST00000599833 SETD2Q9BYW2 2564 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 IQCF6A8MYZ5 107 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 LCATP04180 440 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 CD55P08174 381 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 SBK2P0C263 348 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 CX3CR1P49238 355 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 ROM1Q03395 351 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 HNRNPA0Q13151 305 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 OGFRL1Q5TC84 451 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 OR2T2Q6IF00 324 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 LRRN1Q6UXK5 716 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 OR2AE1Q8NHA4 323 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 UBASH3BQ8TF42 649 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 THEM6Q8WUY1 208 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 CNN2Q99439 309 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 REPIN1Q9BWE0 567 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 MYOZ1Q9NP98 299 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 LRP12Q9Y561 859 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 ORC6Q9Y5N6 252 aa16.57■□□□□ 0.24
SHKBP1-221ENST00000599833 LOC390937A0A1W2PQ73 354 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 J3QRE1 110 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 ENTPD6O75354 484 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 SRSF10O75494 262 aaKnown RBP16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 INHBBP09529 407 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 CSF3P09919 207 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 PDLIM4P50479 330 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 ZNF121P58317 390 aaPredicted RBP16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 CDC42P60953 191 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 CCL8P80075 99 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 MRPS11P82912 194 aaKnown RBP16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 TRIP10Q15642 601 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 OCLNQ16625 522 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 MOGQ16653 247 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 PCGF3Q3KNV8 242 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 SSX6Q7RTT6 188 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 ENTHD1Q8IYW4 607 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 OR5L1Q8NGL2 311 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 SNX33Q8WV41 574 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 RDH12Q96NR8 316 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 RHNO1Q9BSD3 238 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 WARS2Q9UGM6 360 aaKnown RBP16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 GPR160Q9UJ42 338 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 CACNG2Q9Y698 323 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 CUBNO60494 3623 aa16.56■□□□□ 0.24
SHKBP1-221ENST00000599833 LOC100130705A0A1B0GUX0 176 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 NDUFS8O00217 210 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 MLNRO43193 412 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 SPRY3O43610 288 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 TIMM8AO60220 97 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 RBMXP38159 391 aaKnown RBP16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 LIPAP38571 399 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 NR4A2P43354 598 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 SLC15A1P46059 708 aa16.55■□□□□ 0.24
SHKBP1-221ENST00000599833 SLC6A9P48067 706 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms