RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 A0A096LNT2 108 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 SLC22A31A6NKX4 558 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 C17orf100A8MU93 164 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 H3BSA7 217 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 H7C1Q1 480 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 IGHV1-46P01743 117 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 RAC2P15153 192 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 CX3CR1P49238 355 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 SELENOVP59797 346 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 ADARB1P78563 741 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 ZNF92Q03936 586 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 TAF13Q15543 124 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 OCLNQ16625 522 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 GLYATL3Q5SZD4 288 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 LCN1P1Q5VSP4 162 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 DRAM2Q6UX65 266 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 UNQ6126/PRO20091Q6UXV3 157 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 GID4Q8IVV7 300 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 SLC35F2Q8IXU6 374 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 OR5AS1Q8N127 324 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 ZNF283Q8N7M2 679 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 MAPK1IP1LQ8NDC0 245 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 APH1BQ8WW43 257 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 YIPF5Q969M3 257 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 PPP1R14AQ96A00 147 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 CNN2Q99439 309 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 APOL4Q9BPW4 351 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 RAB1BQ9H0U4 201 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 MS4A5Q9H3V2 200 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 BARX1Q9HBU1 254 aaPredicted RBP12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 IMPAD1Q9NX62 359 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 WARS2Q9UGM6 360 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 LAMP5Q9UJQ1 280 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 ARFGEF3Q5TH69 2177 aa12.1□□□□□ -0.47
SHKBP1-217ENST00000598558 H0YL77 283 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 J3QW42 95 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 SPRY3O43610 288 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 TIMM8AO60220 97 aaPredicted RBP12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 H2BFMP0C1H6 154 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 CD99P14209 185 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 TUBG1P23258 451 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 SLC6A9P48067 706 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 ZNF81P51508 661 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 ZNF121P58317 390 aaPredicted RBP12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 GRB2P62993 217 aaKnown RBP12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 CCL8P80075 99 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 SLC34A1Q06495 639 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 CDK5R2Q13319 367 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 TSTQ16762 297 aaKnown RBP12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 USP51Q70EK9 711 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 RHOUQ7L0Q8 258 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 PACRGLQ8N7B6 248 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 C10orf105Q8TEF2 133 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 NEU4Q8WWR8 484 aaPredicted RBP12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 SGK3Q96BR1 496 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 TBX5Q99593 518 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 SMR3AQ99954 134 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 SOX7Q9BT81 388 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 RNPEPL1Q9HAU8 725 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 BRD7Q9NPI1 651 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 TUBG2Q9NRH3 451 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 LRP12Q9Y561 859 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 ARID1AO14497 2285 aa12.09□□□□□ -0.47
SHKBP1-217ENST00000598558 CELSR1Q9NYQ6 3014 aa12.08□□□□□ -0.47
SHKBP1-217ENST00000598558 VWC2LB2RUY7 222 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 RNF223E7ERA6 249 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 J3QRE1 110 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 WBP4O75554 376 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 PNPP00491 289 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 DAOP14920 347 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 SLC15A1P46059 708 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 CXCR4P61073 352 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 ROM1Q03395 351 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 SMN1Q16637 294 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF684Q5T5D7 378 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 FAM57BQ71RH2 274 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 OR5L1Q8NGL2 311 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 UBASH3BQ8TF42 649 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 COG8Q96MW5 612 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 RDH12Q96NR8 316 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 OR8B4Q96RC9 309 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 REPIN1Q9BWE0 567 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 AMBNQ9NP70 447 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 CLN6Q9NWW5 311 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 MRM2Q9UI43 246 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 FBXO9Q9UK97 447 aaPredicted RBP12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 CACNG2Q9Y698 323 aa12.08□□□□□ -0.48
SHKBP1-217ENST00000598558 A0A1W2PQL4 384 aaPredicted RBP12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 SMAD7O15105 426 aaKnown RBP12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 SRSF10O75494 262 aaKnown RBP12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 ANXA2P07355 339 aaKnown RBP12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 ADH4P08319 380 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 HSD11B1P28845 292 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF85Q03923 595 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 MOGQ16653 247 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF691Q5VV52 312 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF322Q6U7Q0 402 aaPredicted RBP12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 PLEKHG7Q6ZR37 379 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 KRT77Q7Z794 578 aa12.07□□□□□ -0.48
SHKBP1-217ENST00000598558 ZNF786Q8N393 782 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms