RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 NCCRP1Q6ZVX7 275 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-209ENST00000597423 USP43Q70EL4 1123 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 TUBA1AQ71U36 451 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 RELL2Q8NC24 303 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-209ENST00000597423 SLC30A7Q8NEW0 376 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 OR5L1Q8NGL2 311 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 CA5BP1Q8WTZ4 195 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 S100PBPQ96BU1 408 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 C12orf43Q96C57 262 aaKnown RBP13.27□□□□□ -0.29
TRIM28-209ENST00000597423 KCTD7Q96MP8 289 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 ACTR6Q9GZN1 396 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 RGCCQ9H4X1 137 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 SLC24A3Q9HC58 644 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 KCNJ16Q9NPI9 418 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 SLC22A13Q9Y226 551 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 ZGRF1Q86YA3 2104 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 A0A0U1RQV5 110 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 ZNF879B4DU55 563 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 GABRPO00591 440 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 TBX1O43435 398 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 MTRF1O75570 445 aaKnown RBP13.26□□□□□ -0.29
TRIM28-209ENST00000597423 CD2P06729 351 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 DBHP09172 617 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 OCM2P0CE71 109 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 CCNOP22674 350 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 UGT2B10P36537 528 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 KIR3DL2P43630 455 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 LSM3P62310 102 aaKnown RBP13.26□□□□□ -0.29
TRIM28-209ENST00000597423 MALLQ13021 153 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 PPA1Q15181 289 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 IGFBP7Q16270 282 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 FBXL19-AS1Q494R0 122 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 Q499Y3 187 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 ARHGAP21Q5T5U3 1957 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 SLC16A12Q6ZSM3 486 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 COMMD2Q86X83 199 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 SLC7A6Q92536 515 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 APOBEC3DQ96AK3 386 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-209ENST00000597423 POM121L2Q96KW2 1035 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 NAA50Q9GZZ1 169 aaKnown RBP13.26□□□□□ -0.29
TRIM28-209ENST00000597423 SLITRK2Q9H156 845 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 CDH20Q9HBT6 801 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 TXNL4BQ9NX01 149 aaKnown RBP13.26□□□□□ -0.29
TRIM28-209ENST00000597423 DHDHQ9UQ10 334 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 SLC25A15Q9Y619 301 aa13.26□□□□□ -0.29
TRIM28-209ENST00000597423 RP1L1Q8IWN7 2480 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-209ENST00000597423 H3BMQ9 156 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 J3QW42 95 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 SYT7O43581 403 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 SLC2A1P11166 492 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 ZNF14P17017 642 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-209ENST00000597423 AGAP20933 346 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 NR4A1P22736 598 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 TUBG1P23258 451 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 IDH3GP51553 393 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-209ENST00000597423 ODF4Q2M2E3 257 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 ZMAT1Q5H9K5 638 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 C22orf42Q6IC83 251 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 XKRXQ6PP77 449 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 UNQ9370/PRO34162Q6UXP9 181 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 DOK3Q7L591 496 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 C1orf174Q8IYL3 243 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 OR8B12Q8NGG6 310 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 TSEN15Q8WW01 171 aaKnown RBP13.25□□□□□ -0.29
TRIM28-209ENST00000597423 AKAP1Q92667 903 aaKnown RBP eCLIP13.25□□□□□ -0.29
TRIM28-209ENST00000597423 RNASE6Q93091 150 aaKnown RBP13.25□□□□□ -0.29
TRIM28-209ENST00000597423 CCDC120Q96HB5 630 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 C1QTNF5Q9BXJ0 243 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 NGBQ9NPG2 151 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 TUBG2Q9NRH3 451 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 TBCCD1Q9NVR7 557 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 CRNNQ9UBG3 495 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-209ENST00000597423 CKLFQ9UBR5 152 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 ATRXP46100 2492 aa13.25□□□□□ -0.29
TRIM28-209ENST00000597423 USP24Q9UPU5 2620 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 LOC100509620A0A075B734 347 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 A0A1W2PR80 420 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 ZNF503-AS2A6NEH8 195 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 P2RY10O00398 339 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 XRCC2O43543 280 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 ATE1O95260 518 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 IGKV3-15P01624 115 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 TTRP02766 147 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 MYL9P24844 172 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 VBP1P61758 197 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 ADORA2A-AS1P86434 159 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 FOXB2Q5VYV0 432 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 TMEM91Q6ZNR0 172 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 PRSS45Q7RTY3 260 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 NAA40Q86UY6 237 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 RDH10Q8IZV5 341 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 ZNF843Q8N446 348 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 OR13C3Q8NGS6 347 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 OR51E1Q8TCB6 317 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 RPL3LQ92901 407 aaKnown RBP13.24□□□□□ -0.29
TRIM28-209ENST00000597423 PPP1R14AQ96A00 147 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 ZNF75AQ96N20 296 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 KCNS3Q9BQ31 491 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 CENPOQ9BU64 300 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 OPA3Q9H6K4 179 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms