RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 SPRYD4Q8WW59 207 aaPredicted RBP10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 RORBQ92753 470 aa10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 RNASE6Q93091 150 aaKnown RBP10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 SPTSSAQ969W0 71 aa10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 AMELYQ99218 206 aa10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 COQ7Q99807 217 aa10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 WNT5BQ9H1J7 359 aa10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 NIPAL2Q9H841 368 aa10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 ELOVL3Q9HB03 270 aa10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 ACOT13Q9NPJ3 140 aa10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 TRIM36Q9NQ86 728 aa10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 DDX28Q9NUL7 540 aaKnown RBP10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 SLCO1C1Q9NYB5 712 aa10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 ATPIF1Q9UII2 106 aa10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 LRP12Q9Y561 859 aa10.47□□□□□ -0.73
SHKBP1-213ENST00000597325 A0A1W2PR80 420 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 OR6C6A6NF89 314 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 RPP14O95059 124 aaKnown RBP10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 APOC1P02654 83 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 HSMCR30P0CW71 290 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 PSMB9P28065 219 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 CCKARP32238 428 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 APLNRP35414 380 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 OPRL1P41146 370 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 GBX2P52951 348 aaPredicted RBP10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 OR12D2P58182 307 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 TAS2R43P59537 309 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 PPA1Q15181 289 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 SPHARQ15513 63 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 ZNF829Q3KNS6 432 aaPredicted RBP10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 CCDC92Q53HC0 331 aaPredicted RBP10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 EGFL6Q8IUX8 553 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 OR10S1Q8NGN2 331 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 FGFBP3Q8TAT2 258 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 FAM222BQ8WU58 562 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 GATAD2BQ8WXI9 593 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 HSD17B8Q92506 261 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 ISG20L2Q9H9L3 353 aaKnown RBP10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 PNRC2Q9NPJ4 139 aaKnown RBP10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 ACOXLQ9NUZ1 547 aa10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 MRM2Q9UI43 246 aaKnown RBP10.46□□□□□ -0.73
SHKBP1-213ENST00000597325 ZNF503-AS2A6NEH8 195 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 TRIM64CA6NLI5 447 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 PRR32B1ATL7 298 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 MAGEB4O15481 346 aaPredicted RBP10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 SYNGR3O43761 229 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 LCKP06239 509 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 COX5BP10606 129 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 CBR1P16152 277 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 PCMT1P22061 227 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 PEX19P40855 299 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 GDI2P50395 445 aaKnown RBP10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 IDH3GP51553 393 aaPredicted RBP10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 SORDQ00796 357 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 GALK2Q01415 458 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 RAB39AQ14964 217 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 KRTAP24-1Q3LI83 254 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 UBE2UQ5VVX9 321 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 ALKBH2Q6NS38 261 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 KLBQ86Z14 1044 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 ZNF283Q8N7M2 679 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 WDR31Q8NA23 367 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 PELI1Q96FA3 418 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 OR5M11Q96RB7 305 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 KCNJ15Q99712 375 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 ZNF649Q9BS31 505 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 MED18Q9BUE0 208 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 NOX3Q9HBY0 568 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 B3GNT2Q9NY97 397 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 GTF2A1LQ9UNN4 478 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 LSM2Q9Y333 95 aaKnown RBP10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 SLC25A15Q9Y619 301 aa10.45□□□□□ -0.74
SHKBP1-213ENST00000597325 A0A1W2PPR1 153 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 F5H5K5 113 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 LOC110117498-PIK3R3F6TDL0 507 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 M0R135 149 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 ABHD16AO95870 558 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 STOMP27105 288 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 APEX1P27695 318 aaKnown RBP10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 DCTDP32321 178 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 PSMB10P40306 273 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 SLC6A9P48067 706 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 CX3CR1P49238 355 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 PRKXP51817 358 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 NR1H2P55055 460 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 TPTEP56180 551 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 PSMA6P60900 246 aaKnown RBP10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 BDH1Q02338 343 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 TAB1Q15750 504 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 TIGD6Q17RP2 521 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 TBC1D28Q2M2D7 210 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 ZNF684Q5T5D7 378 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 LIPNQ5VXI9 398 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 SLC30A7Q8NEW0 376 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 OR1J2Q8NGS2 313 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 UFD1Q92890 307 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 MUL1Q969V5 352 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 ZNF799Q96GE5 643 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 MGLLQ99685 303 aa10.44□□□□□ -0.74
SHKBP1-213ENST00000597325 DOK1Q99704 481 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms