RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 HLXQ14774 488 aaPredicted RBP12.81□□□□□ -0.36
UPF1-202ENST00000594243 TMEM255AQ5JRV8 349 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 SPATC1Q76KD6 591 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 ZNF283Q8N7M2 679 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 OR8J1Q8NGP2 316 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 ZNF582Q96NG8 517 aaPredicted RBP12.81□□□□□ -0.36
UPF1-202ENST00000594243 EGLN1Q9GZT9 426 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 TMEM14AQ9Y6G1 99 aa12.81□□□□□ -0.36
UPF1-202ENST00000594243 ZNF469Q96JG9 3925 aaPredicted RBP12.81□□□□□ -0.36
UPF1-202ENST00000594243 CCDC182A6NF36 153 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 VWC2LB2RUY7 222 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 IGHV1-46P01743 117 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 ACHEP22303 614 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 TNFSF4P23510 183 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 COL8A2P25067 703 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 LOXL1Q08397 574 aaPredicted RBP12.8□□□□□ -0.36
UPF1-202ENST00000594243 GGTLC2Q14390 218 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 TSTQ16762 297 aaKnown RBP12.8□□□□□ -0.36
UPF1-202ENST00000594243 ZIK1Q3SY52 487 aaPredicted RBP12.8□□□□□ -0.36
UPF1-202ENST00000594243 KCTD18Q6PI47 426 aaPredicted RBP12.8□□□□□ -0.36
UPF1-202ENST00000594243 CLEC9AQ6UXN8 241 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 PGAP1Q75T13 922 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 OR8G5Q8NG78 346 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 HRASLS5Q96KN8 279 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 MNTQ99583 582 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 NIPAL2Q9H841 368 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 CHODLQ9H9P2 273 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 SAP30LQ9HAJ7 183 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 MSL2Q9HCI7 577 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 IMPAD1Q9NX62 359 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 HAO2Q9NYQ3 351 aa12.8□□□□□ -0.36
UPF1-202ENST00000594243 ARFGEF3Q5TH69 2177 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 USF3Q68DE3 2245 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 ZSCAN5BA6NJL1 495 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 IQCF6A8MYZ5 107 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 LYNX1G3V0Z9 82 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 M0R129 80 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 CD55P08174 381 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 LYNX1P0DP58 116 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 ALOX5APP20292 161 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 USF1P22415 310 aaPredicted RBP12.79□□□□□ -0.36
UPF1-202ENST00000594243 OPRL1P41146 370 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 CRYBB2P43320 205 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 CX3CR1P49238 355 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 RIPPLY3P57055 190 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 TMEM33P57088 247 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 CDK5R2Q13319 367 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 GK2Q14410 553 aaPredicted RBP12.79□□□□□ -0.36
UPF1-202ENST00000594243 SNAI3Q3KNW1 292 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 OR2T2Q6IF00 324 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 USP51Q70EK9 711 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 MRPL21Q7Z2W9 205 aaKnown RBP12.79□□□□□ -0.36
UPF1-202ENST00000594243 BCDIN3DQ7Z5W3 292 aaKnown RBP12.79□□□□□ -0.36
UPF1-202ENST00000594243 MAPK1IP1LQ8NDC0 245 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 OR13G1Q8NGZ3 307 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 FAM81AQ8TBF8 368 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 ASB17Q8WXJ9 295 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 GTF3AQ92664 365 aaKnown RBP12.79□□□□□ -0.36
UPF1-202ENST00000594243 RFKQ969G6 155 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 AMELYQ99218 206 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 CNN2Q99439 309 aaKnown RBP12.79□□□□□ -0.36
UPF1-202ENST00000594243 SLC29A1Q99808 456 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 SMR3AQ99954 134 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 GSX1Q9H4S2 264 aaPredicted RBP12.79□□□□□ -0.36
UPF1-202ENST00000594243 OPA3Q9H6K4 179 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 WARS2Q9UGM6 360 aaKnown RBP12.79□□□□□ -0.36
UPF1-202ENST00000594243 N6AMT1Q9Y5N5 214 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 ACANP16112 2415 aa12.79□□□□□ -0.36
UPF1-202ENST00000594243 IGHV1-69-2A0A0G2JMI3 117 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 ANKRD65E5RJM6 399 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 PHYHO14832 338 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 XRCC2O43543 280 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 NCR1O76036 304 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 ANXA2P07355 339 aaKnown RBP12.78□□□□□ -0.36
UPF1-202ENST00000594243 MRPL3P09001 348 aaKnown RBP12.78□□□□□ -0.36
UPF1-202ENST00000594243 TNFRSF1AP19438 455 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 HTR1FP30939 366 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 HCCSP53701 268 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 TNFAIP6P98066 277 aaPredicted RBP12.78□□□□□ -0.36
UPF1-202ENST00000594243 POU4F2Q12837 409 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 TMED1Q13445 227 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 RIN1Q13671 783 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 HFEQ30201 348 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 DEGS2Q6QHC5 323 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 KRT77Q7Z794 578 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 OR5AS1Q8N127 324 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 OR2Z1Q8NG97 314 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 OR52H1Q8NGJ2 320 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 ELMOD3Q96FG2 381 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 REPIN1Q9BWE0 567 aaKnown RBP12.78□□□□□ -0.36
UPF1-202ENST00000594243 MROQ9BYG7 248 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 BPESC1Q9GZL8 116 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 C8orf4Q9NR00 106 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 IL19Q9UHD0 177 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 PLCE1Q9P212 2302 aa12.78□□□□□ -0.36
UPF1-202ENST00000594243 A0A096LNT2 108 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 TBX1O43435 398 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 ZNF254O75437 659 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 LY6G6DO95868 133 aa12.77□□□□□ -0.37
UPF1-202ENST00000594243 HEXAP06865 529 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms