RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ZNF283Q8N7M2 679 aa12.9□□□□□ -0.34
TRIM28-203ENST00000593582 OR10AD1Q8NGE0 317 aa12.9□□□□□ -0.34
TRIM28-203ENST00000593582 SLC7A6OSQ96CW6 309 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-203ENST00000593582 SLC30A2Q9BRI3 323 aa12.9□□□□□ -0.34
TRIM28-203ENST00000593582 COPS4Q9BT78 406 aa12.9□□□□□ -0.34
TRIM28-203ENST00000593582 ZNF556Q9HAH1 456 aa12.9□□□□□ -0.34
TRIM28-203ENST00000593582 CMC2Q9NRP2 79 aa12.9□□□□□ -0.34
TRIM28-203ENST00000593582 DDX28Q9NUL7 540 aaKnown RBP12.9□□□□□ -0.34
TRIM28-203ENST00000593582 A0A0G2JMP0 313 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 A0A0X1KG70 313 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 IFNL4K9M1U5 179 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 ZNF593O00488 134 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-203ENST00000593582 PLPP2O43688 288 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 PNPP00491 289 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 SBK2P0C263 348 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 CLUP10909 449 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 POU1F1P28069 291 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 SRP9P49458 86 aaKnown RBP12.89□□□□□ -0.35
TRIM28-203ENST00000593582 TAF13Q15543 124 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 PCK2Q16822 640 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 TEX30Q5JUR7 227 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 SHQ1Q6PI26 577 aaKnown RBP12.89□□□□□ -0.35
TRIM28-203ENST00000593582 ZNF771Q7L3S4 317 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-203ENST00000593582 TMEM179BQ7Z7N9 219 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 NAA40Q86UY6 237 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 KLHL36Q8N4N3 616 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 SPICQ8N5J4 248 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 TEX29Q8N6K0 151 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 IQCF1Q8N6M8 205 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 ZNF511Q8NB15 262 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 OR4M2Q8NGB6 313 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 OR10S1Q8NGN2 331 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 ST7LQ8TDW4 575 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 SLCO4A1Q96BD0 722 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 OTULINQ96BN8 352 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 GCM1Q9NP62 436 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 TMEM100Q9NV29 134 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 DCAF16Q9NXF7 216 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 PCDHB10Q9UN67 800 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 POMPQ9Y244 141 aa12.89□□□□□ -0.35
TRIM28-203ENST00000593582 TCRBV3S1A0A5B6 114 aa12.88□□□□□ -0.35
TRIM28-203ENST00000593582 IGHV2-70P01814 119 aa12.88□□□□□ -0.35
TRIM28-203ENST00000593582 PAICSP22234 425 aaKnown RBP12.88□□□□□ -0.35
TRIM28-203ENST00000593582 OTX1P32242 354 aaPredicted RBP12.88□□□□□ -0.35
TRIM28-203ENST00000593582 GRK5P34947 590 aa12.88□□□□□ -0.35
TRIM28-203ENST00000593582 BTG1P62324 171 aa12.88□□□□□ -0.35
TRIM28-203ENST00000593582 CBX1P83916 185 aa12.88□□□□□ -0.35
TRIM28-203ENST00000593582 SCGB2A2Q13296 93 aa12.88□□□□□ -0.35
TRIM28-203ENST00000593582 DRAM2Q6UX65 266 aa12.88□□□□□ -0.35
TRIM28-203ENST00000593582 MRPL21Q7Z2W9 205 aaKnown RBP12.88□□□□□ -0.35
TRIM28-203ENST00000593582 SPRYD4Q8WW59 207 aaPredicted RBP12.88□□□□□ -0.35
TRIM28-203ENST00000593582 SLAMF6Q96DU3 332 aa12.88□□□□□ -0.35
TRIM28-203ENST00000593582 MEGF10Q96KG7 1140 aa12.88□□□□□ -0.35
TRIM28-203ENST00000593582 CENPMQ9NSP4 180 aa12.88□□□□□ -0.35
TRIM28-203ENST00000593582 DNAJB9Q9UBS3 223 aa12.88□□□□□ -0.35
TRIM28-203ENST00000593582 METRNQ9UJH8 293 aa12.88□□□□□ -0.35
TRIM28-203ENST00000593582 FAM183AA6NL82 134 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 H0YL77 283 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 TMEM178BH3BS89 294 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 GSC2O15499 205 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 MLNRO43193 412 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 FKBP6O75344 327 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 PSKH1P11801 424 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 ANXA8P13928 327 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 GATA3P23771 443 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 SLC15A1P46059 708 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 MMP16P51512 607 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 PRSS12P56730 875 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 HNRNPA0Q13151 305 aaKnown RBP12.87□□□□□ -0.35
TRIM28-203ENST00000593582 GINS1Q14691 196 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 SNAI3Q3KNW1 292 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 TMEM155Q4W5P6 130 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 LIPNQ5VXI9 398 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 LRRC28Q86X40 367 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-203ENST00000593582 PHC2Q8IXK0 858 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 RFLNBQ8N5W9 214 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 SIGLEC11Q96RL6 698 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 INTS14Q96SY0 518 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 KCNJ15Q99712 375 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 TEX12Q9BXU0 123 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 METTL17Q9H7H0 456 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-203ENST00000593582 MED20Q9H944 212 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 G6PC2Q9NQR9 355 aa12.87□□□□□ -0.35
TRIM28-203ENST00000593582 NOP16Q9Y3C1 178 aaKnown RBP12.87□□□□□ -0.35
TRIM28-203ENST00000593582 A0A1B0GWJ7 208 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 LRRC30A6NM36 301 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 ZNF878C9JN71 531 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 F5H5P2 479 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 J3QLI3 93 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 TCF21O43680 179 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 HLA-DPB1P04440 258 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 HMGN1P05114 100 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 OSMP13725 252 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 GSTT1P30711 240 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 RBMXP38159 391 aaKnown RBP12.86□□□□□ -0.35
TRIM28-203ENST00000593582 MDH2P40926 338 aaKnown RBP12.86□□□□□ -0.35
TRIM28-203ENST00000593582 RASSF2P50749 326 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 PRKXP51817 358 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 RAD23AP54725 363 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 GRB2P62993 217 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms