RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 MS4A3Q96HJ5 214 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 PGLYRP3Q96LB9 341 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 C1QTNF6Q9BXI9 259 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 C1QTNF5Q9BXJ0 243 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 OR10A2Q9H208 303 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 BATF3Q9NR55 127 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 TBCCD1Q9NVR7 557 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 EIF3KQ9UBQ5 218 aaKnown RBP9.31□□□□□ -0.92
SS18-213ENST00000579640 ZNF391Q9UJN7 358 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 SMG1Q96Q15 3661 aaKnown RBP9.31□□□□□ -0.92
SS18-213ENST00000579640 ZNF462Q96JM2 2506 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 A0A0U1RQV5 110 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 WIPF3A6NGB9 483 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 ZFPL1O95159 310 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 LCATP04180 440 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 ISG15P05161 165 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 CELA3BP08861 270 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 EPXP11678 715 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 CD36P16671 472 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 CCNOP22674 350 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 PCSK6P29122 969 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 TGFBR2P37173 567 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 KIR3DL2P43630 455 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 ZNF83P51522 516 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 SLC3A1Q07837 685 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 TIMM50Q3ZCQ8 353 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 YIF1BQ5BJH7 314 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 TMEM244Q5VVB8 128 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 SEZ6L2Q6UXD5 910 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 FAM57BQ71RH2 274 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 SATL1Q86VE3 508 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 WFDC8Q8IUA0 241 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 C1orf174Q8IYL3 243 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 ZNF676Q8N7Q3 588 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 CCDC54Q8NEL0 328 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 OR8B12Q8NGG6 310 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 THRSPQ92748 146 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 GHSRQ92847 366 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 ITFG2Q969R8 447 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 WFIKKN1Q96NZ8 548 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 RGCCQ9H4X1 137 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 BRD7Q9NPI1 651 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 NPAP1Q9NZP6 1156 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 NDUFA13Q9P0J0 144 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 RALYQ9UKM9 306 aaKnown RBP9.31□□□□□ -0.92
SS18-213ENST00000579640 ZNF281Q9Y2X9 895 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 PNMA8CA0A1B0GUJ8 204 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 M0R1B8 84 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 XRCC2O43543 280 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 SERPINA3P01011 423 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 TTRP02766 147 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 HLA-DPB1P04440 258 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 THBDP07204 575 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 SLC2A1P11166 492 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 CCL2P13500 99 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 ACHEP22303 614 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 GALP22466 123 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 TUBG1P23258 451 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 PTAFRP25105 342 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 NAAAQ02083 359 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 HGFACQ04756 655 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 TMEM108Q6UXF1 575 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 NAA40Q86UY6 237 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 MYPOPQ86VE0 399 aaPredicted RBP9.3□□□□□ -0.92
SS18-213ENST00000579640 OR5L1Q8NGL2 311 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 DACH2Q96NX9 599 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 KCNS3Q9BQ31 491 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 PDCD1LG2Q9BQ51 273 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 TUBG2Q9NRH3 451 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 SLC22A13Q9Y226 551 aa9.3□□□□□ -0.92
SS18-213ENST00000579640 SF3B6Q9Y3B4 125 aaKnown RBP9.3□□□□□ -0.92
SS18-213ENST00000579640 HCFC1P51610 2035 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 IGHV2OR16-5A0A0B4J2B6 119 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 SMIM31A0A1B0GVY4 71 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 TUBAL3A6NHL2 446 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 TBX1O43435 398 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 CRYAAP02489 173 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 ZNF35P13682 527 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 ZNF12P17014 697 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 CFL1P23528 166 aaKnown RBP9.29□□□□□ -0.92
SS18-213ENST00000579640 MALLQ13021 153 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 ALKBH2Q6NS38 261 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 GDPGP1Q6ZNW5 385 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 C22orf34Q6ZV56 151 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 GPR148Q8TDV2 347 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 ZC3HAV1LQ96H79 300 aaKnown RBP9.29□□□□□ -0.92
SS18-213ENST00000579640 FUNDC2Q9BWH2 189 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 OPA3Q9H6K4 179 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 HHLA2Q9UM44 414 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 STUB1Q9UNE7 303 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 SPEF1Q9Y4P9 236 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 N6AMT1Q9Y5N5 214 aa9.29□□□□□ -0.92
SS18-213ENST00000579640 A0A1B0GVI7 797 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 TRDV1A0A1B0GX56 115 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 IGLV3-1P01715 115 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 PLA2G2AP14555 144 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 CCL1P22362 96 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 CD40P25942 277 aa9.28□□□□□ -0.92
SS18-213ENST00000579640 GRNP28799 593 aaKnown RBP9.28□□□□□ -0.92
SS18-213ENST00000579640 WNT5AP41221 380 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms