RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 HELZ2Q9BYK8 2649 aaKnown RBP7.01□□□□□ -1.29
VPS39-213ENST00000570062 CEP295Q9C0D2 2601 aa7□□□□□ -1.29
VPS39-213ENST00000570062 IFITM5A6NNB3 132 aa7□□□□□ -1.29
VPS39-213ENST00000570062 POM121CA8CG34 1229 aa7□□□□□ -1.29
VPS39-213ENST00000570062 UPK1BO75841 260 aa7□□□□□ -1.29
VPS39-213ENST00000570062 SCGNO76038 276 aa7□□□□□ -1.29
VPS39-213ENST00000570062 UBL3O95164 117 aa7□□□□□ -1.29
VPS39-213ENST00000570062 GPANK1O95872 356 aa7□□□□□ -1.29
VPS39-213ENST00000570062 SERPINA5P05154 406 aa7□□□□□ -1.29
VPS39-213ENST00000570062 CD37P11049 281 aa7□□□□□ -1.29
VPS39-213ENST00000570062 CCL1P22362 96 aa7□□□□□ -1.29
VPS39-213ENST00000570062 TUBG1P23258 451 aa7□□□□□ -1.29
VPS39-213ENST00000570062 OTX1P32242 354 aaPredicted RBP7□□□□□ -1.29
VPS39-213ENST00000570062 CDAP32320 146 aa7□□□□□ -1.29
VPS39-213ENST00000570062 GNALP38405 381 aa7□□□□□ -1.29
VPS39-213ENST00000570062 RPS27P42677 84 aaKnown RBP7□□□□□ -1.29
VPS39-213ENST00000570062 KIR3DL2P43630 455 aa7□□□□□ -1.29
VPS39-213ENST00000570062 OR3A2P47893 321 aa7□□□□□ -1.29
VPS39-213ENST00000570062 CX3CR1P49238 355 aa7□□□□□ -1.29
VPS39-213ENST00000570062 EVX1P49640 407 aa7□□□□□ -1.29
VPS39-213ENST00000570062 MRPS10P82664 201 aaKnown RBP7□□□□□ -1.29
VPS39-213ENST00000570062 SRSF6Q13247 344 aaKnown RBP7□□□□□ -1.29
VPS39-213ENST00000570062 MRPL49Q13405 166 aaKnown RBP7□□□□□ -1.29
VPS39-213ENST00000570062 ENDOGQ14249 297 aaKnown RBP7□□□□□ -1.29
VPS39-213ENST00000570062 TSPO2Q5TGU0 170 aa7□□□□□ -1.29
VPS39-213ENST00000570062 NSUN5P2Q63ZY6 315 aa7□□□□□ -1.29
VPS39-213ENST00000570062 PYHIN1Q6K0P9 492 aa7□□□□□ -1.29
VPS39-213ENST00000570062 ANKRD16Q6P6B7 361 aa7□□□□□ -1.29
VPS39-213ENST00000570062 CORO6Q6QEF8 472 aa7□□□□□ -1.29
VPS39-213ENST00000570062 FAM131AQ6UXB0 335 aa7□□□□□ -1.29
VPS39-213ENST00000570062 STAC2Q6ZMT1 411 aa7□□□□□ -1.29
VPS39-213ENST00000570062 Q6ZSR3 168 aa7□□□□□ -1.29
VPS39-213ENST00000570062 FAM214BQ7L5A3 538 aa7□□□□□ -1.29
VPS39-213ENST00000570062 SIAH3Q8IW03 269 aa7□□□□□ -1.29
VPS39-213ENST00000570062 TUSC5Q8IXB3 177 aa7□□□□□ -1.29
VPS39-213ENST00000570062 C1orf174Q8IYL3 243 aa7□□□□□ -1.29
VPS39-213ENST00000570062 UBE2J2Q8N2K1 259 aa7□□□□□ -1.29
VPS39-213ENST00000570062 MFSD4AQ8N468 514 aa7□□□□□ -1.29
VPS39-213ENST00000570062 C1orf162Q8NEQ5 155 aaPredicted RBP7□□□□□ -1.29
VPS39-213ENST00000570062 OR13C3Q8NGS6 347 aa7□□□□□ -1.29
VPS39-213ENST00000570062 OR6K3Q8NGY3 331 aa7□□□□□ -1.29
VPS39-213ENST00000570062 OR1F12Q8NHA8 337 aa7□□□□□ -1.29
VPS39-213ENST00000570062 PP6455Q8WZ26 134 aa7□□□□□ -1.29
VPS39-213ENST00000570062 PTX4Q96A99 478 aa7□□□□□ -1.29
VPS39-213ENST00000570062 S100A16Q96FQ6 103 aaKnown RBP7□□□□□ -1.29
VPS39-213ENST00000570062 PGAM5Q96HS1 289 aa7□□□□□ -1.29
VPS39-213ENST00000570062 GPR137Q96N19 417 aa7□□□□□ -1.29
VPS39-213ENST00000570062 FOXN4Q96NZ1 517 aa7□□□□□ -1.29
VPS39-213ENST00000570062 TECTBQ96PL2 329 aa7□□□□□ -1.29
VPS39-213ENST00000570062 UQCC2Q9BRT2 126 aa7□□□□□ -1.29
VPS39-213ENST00000570062 TTTY10Q9BZA0 68 aa7□□□□□ -1.29
VPS39-213ENST00000570062 ABCB9Q9NP78 766 aa7□□□□□ -1.29
VPS39-213ENST00000570062 OBP2BQ9NPH6 170 aa7□□□□□ -1.29
VPS39-213ENST00000570062 SLC17A5Q9NRA2 495 aa7□□□□□ -1.29
VPS39-213ENST00000570062 TUBG2Q9NRH3 451 aa7□□□□□ -1.29
VPS39-213ENST00000570062 CYSLTR2Q9NS75 346 aa7□□□□□ -1.29
VPS39-213ENST00000570062 SPRR3Q9UBC9 169 aa7□□□□□ -1.29
VPS39-213ENST00000570062 COMMD3Q9UBI1 195 aa7□□□□□ -1.29
VPS39-213ENST00000570062 GHRLQ9UBU3 117 aa7□□□□□ -1.29
VPS39-213ENST00000570062 MALT1Q9UDY8 824 aa7□□□□□ -1.29
VPS39-213ENST00000570062 DAPK2Q9UIK4 370 aa7□□□□□ -1.29
VPS39-213ENST00000570062 ING1Q9UK53 422 aaPredicted RBP7□□□□□ -1.29
VPS39-213ENST00000570062 AHCTF1Q8WYP5 2266 aa7□□□□□ -1.29
VPS39-213ENST00000570062 PCSK5Q92824 1860 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 A0A0A6YYH2 397 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 LOC107986453A0A1B0GWG9 222 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 A6NJ64 397 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 PRR32B1ATL7 298 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 FAM25AB3EWG3 89 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 FAM25CB3EWG5 89 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 FAM25GB3EWG6 89 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 M0R135 149 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 CTDSP2O14595 271 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 RER1O15258 196 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 XRCC2O43543 280 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 SULT1B1O43704 296 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 PNPP00491 289 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 TTRP02766 147 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 ALDOBP05062 364 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 H2AFB1P0C5Y9 115 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 H2AFB2P0C5Z0 115 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 ZNF20P17024 532 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 KLK2P20151 261 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 RAB3AP20336 220 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 AGTR1P30556 359 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 PITPNBP48739 271 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 ZNF121P58317 390 aaPredicted RBP6.99□□□□□ -1.29
VPS39-213ENST00000570062 RBPJQ06330 500 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 SCN1BQ07699 218 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 CCDC92Q53HC0 331 aaPredicted RBP6.99□□□□□ -1.29
VPS39-213ENST00000570062 CEP78Q5JTW2 689 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 PHYHD1Q5SRE7 291 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 ZBTB37Q5TC79 503 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 CFAP77Q6ZQR2 320 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 SPATC1Q76KD6 591 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 FTMTQ8N4E7 242 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 ZNF433Q8N7K0 673 aaPredicted RBP6.99□□□□□ -1.29
VPS39-213ENST00000570062 OR6M1Q8NGM8 313 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 OR1J2Q8NGS2 313 aa6.99□□□□□ -1.29
VPS39-213ENST00000570062 DEDD2Q8WXF8 326 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms