RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 H0YIV9 168 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 M0QX08 132 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 PLPP1O14494 284 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 CHMP2AO43633 222 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 CACNG3O60359 315 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 CNMDO75829 334 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 NDUFB10O96000 172 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 PAHP00439 452 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 CTSLP07711 333 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 MX1P20591 662 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 GALP22466 123 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 DEKP35659 375 aaKnown RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 CRYBB2P43320 205 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 PSMD8P48556 350 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 GFERP55789 205 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 CMC4P56277 68 aaPredicted RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 RPL23P62829 140 aaKnown RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 PRR3P79522 188 aaKnown RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 CYP24A1Q07973 514 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 BST2Q10589 180 aaKnown RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 ZMYND11Q15326 602 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 OR7A5Q15622 319 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 CHRNA6Q15825 494 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 PGGHGQ32M88 737 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 AVPI1Q5T686 147 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 C1orf185Q5T7R7 199 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 CLEC2AQ6UVW9 174 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 TAS2R42Q7RTR8 314 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 SLC22A9Q8IVM8 553 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 NKAIN4Q8IVV8 208 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 NPWQ8N729 165 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 COX18Q8N8Q8 333 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 SPANXA2-OT1Q8N9U9 137 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 MNS1Q8NEH6 495 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 OR52K1Q8NGK4 314 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 OR13C2Q8NGS9 318 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 PIBF1Q8WXW3 757 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 FBXO32Q969P5 355 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 CCDC126Q96EE4 140 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 GALNT14Q96FL9 552 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 PLIN2Q99541 437 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 ZBTB18Q99592 522 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 HSD17B10Q99714 261 aaKnown RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 CCDC77Q9BR77 488 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 RPRD1BQ9NQG5 326 aaKnown RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 C21orf62Q9NYP8 219 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 ZMAT5Q9UDW3 170 aaKnown RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 PSME2Q9UL46 239 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 STARD10Q9Y365 291 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 CHTOPQ9Y3Y2 248 aaKnown RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 DDX49Q9Y6V7 483 aaKnown RBP1.06□□□□□ -2.24
VPS35-207ENST00000568191 MAPK8IP3Q9UPT6 1336 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 PLEKHG2Q9H7P9 1386 aa1.06□□□□□ -2.24
VPS35-207ENST00000568191 IGHV3-72A0A0B4J1Y9 119 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 GOLGA6L7A0A1B0GV03 622 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 SERTM2A0A1B0GWG4 89 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 PCP4L1A6NKN8 68 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 EIF3HO15372 352 aaKnown RBP eCLIP1.05□□□□□ -2.24
VPS35-207ENST00000568191 NMT2O60551 498 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 SERPINB7O75635 380 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 CTAG2O75638 210 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 CYB5R3P00387 301 aaPredicted RBP1.05□□□□□ -2.24
VPS35-207ENST00000568191 FGF4P08620 206 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 TPM1P09493 284 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 PABPC4LP0CB38 370 aaKnown RBP1.05□□□□□ -2.24
VPS35-207ENST00000568191 CHMLP26374 656 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 OR1G1P47890 313 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 ETV1P50549 477 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 RAB9AP51151 201 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 P2RX1P51575 399 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 ATP5IP56385 69 aaPredicted RBP1.05□□□□□ -2.24
VPS35-207ENST00000568191 ACTR3P61158 418 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 BIKQ13323 160 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 DGCR6Q14129 220 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 DOC2AQ14183 400 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 RCN1Q15293 331 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 HADHQ16836 314 aaKnown RBP1.05□□□□□ -2.24
VPS35-207ENST00000568191 TCEAL5Q5H9L2 206 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 PPM1LQ5SGD2 360 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 AADACL4Q5VUY2 407 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 RNASEKQ6P5S7 137 aaKnown RBP1.05□□□□□ -2.24
VPS35-207ENST00000568191 METAP1DQ6UB28 335 aaPredicted RBP1.05□□□□□ -2.24
VPS35-207ENST00000568191 PDCL2Q8N4E4 241 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 AKR7LQ8NHP1 331 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 CMTM2Q8TAZ6 248 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 NUBPLQ8TB37 319 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 PEX13Q92968 403 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 TCEAL3Q969E4 200 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 CPNE4Q96A23 557 aaPredicted RBP1.05□□□□□ -2.24
VPS35-207ENST00000568191 EEF1AKMT3Q96AZ1 226 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 TPD52L3Q96J77 140 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 C18orf15Q96N68 181 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 IP6K3Q96PC2 410 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 MICU1Q9BPX6 476 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 BCL7BQ9BQE9 202 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 RHOXF2Q9BQY4 288 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 LZTS2Q9BRK4 669 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 STMN4Q9H169 189 aaPredicted RBP1.05□□□□□ -2.24
VPS35-207ENST00000568191 ANKRA2Q9H9E1 313 aa1.05□□□□□ -2.24
VPS35-207ENST00000568191 FANCEQ9HB96 536 aa1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms