RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 HCRTR2O43614 444 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 GDF9O60383 454 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 SLC16A7O60669 478 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 OR2F2O95006 317 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 APOC3P02656 99 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF735P0CB33 412 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 SLC25A4P12235 298 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 CD96P40200 585 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 OR1D4P47884 311 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 DHRS2Q13268 280 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 OR2F1Q13607 317 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 ACKR1Q16570 336 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 C1QL3Q5VWW1 255 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 C5orf46Q6UWT4 87 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 MOB3CQ70IA8 216 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 ADGRE4PQ86SQ3 457 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 RELL2Q8NC24 303 aaPredicted RBP11.83□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF519Q8TB69 540 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 BCL2L14Q9BZR8 327 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 TAS2R4Q9NYW5 299 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 VSX1Q9NZR4 365 aaPredicted RBP11.83□□□□□ -0.52
VPS4A-204ENST00000566354 COMMD9Q9P000 198 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF230Q9UIE0 474 aaPredicted RBP11.83□□□□□ -0.52
VPS4A-204ENST00000566354 CACNA1CQ13936 2221 aa11.83□□□□□ -0.52
VPS4A-204ENST00000566354 IGLV1-36A0A0B4J1U3 117 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 KANTRA0A1W2PQU2 76 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 PMS2P1A4D2B8 440 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 SLC25A12O75746 678 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 TIAF1O95411 115 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 CD34P28906 385 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 ADAM8P78325 824 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 INSM1Q01101 510 aaPredicted RBP11.82□□□□□ -0.52
VPS4A-204ENST00000566354 MFGE8Q08431 387 aaPredicted RBP11.82□□□□□ -0.52
VPS4A-204ENST00000566354 JMJD6Q6NYC1 403 aaPredicted RBP11.82□□□□□ -0.52
VPS4A-204ENST00000566354 BPIFB2Q8N4F0 458 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF321PQ8N8H1 164 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 PTX4Q96A99 478 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 SLC25A44Q96H78 314 aaPredicted RBP11.82□□□□□ -0.52
VPS4A-204ENST00000566354 FOXN4Q96NZ1 517 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 PNO1Q9NRX1 252 aaKnown RBP11.82□□□□□ -0.52
VPS4A-204ENST00000566354 OCIAD1Q9NX40 245 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 TNFSF18Q9UNG2 199 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 MRPS18BQ9Y676 258 aaKnown RBP11.82□□□□□ -0.52
VPS4A-204ENST00000566354 H0YIG0 161 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 LDLRAD4O15165 306 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 NUPL2O15504 423 aaKnown RBP11.82□□□□□ -0.52
VPS4A-204ENST00000566354 ICOSLGO75144 302 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 PLGP00747 810 aaPredicted RBP11.82□□□□□ -0.52
VPS4A-204ENST00000566354 FABP1P07148 127 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 GP1BAP07359 652 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 ACHEP22303 614 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 CAPZA1P52907 286 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 PMPCAQ10713 525 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 MEF2DQ14814 521 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 C1orf189Q5VU69 101 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 OTPQ5XKR4 325 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 C11orf87Q6NUJ2 197 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 POMZP3Q6PJE2 187 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 OR1J2Q8NGS2 313 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 SLC25A36Q96CQ1 311 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 PHYHIPLQ96FC7 376 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 ABHD6Q9BV23 337 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 TMUB1Q9BVT8 246 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 OR8D2Q9GZM6 311 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 TXNIPQ9H3M7 391 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 TMEM185BQ9H7F4 350 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 HHLA2Q9UM44 414 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 KNTC1P50748 2209 aa11.82□□□□□ -0.52
VPS4A-204ENST00000566354 COL27A1Q8IZC6 1860 aaPredicted RBP11.81□□□□□ -0.52
VPS4A-204ENST00000566354 DCDC2BA2VCK2 349 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 DISC1C4P0D8 188 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 BCL2L11O43521 198 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 ALOX12BO75342 701 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 DXOO77932 396 aaKnown RBP11.81□□□□□ -0.52
VPS4A-204ENST00000566354 SMIM6P0DI80 62 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 HLA-GP17693 338 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 RNF4P78317 190 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 EIF2B1Q14232 305 aaKnown RBP11.81□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF169Q14929 603 aaPredicted RBP11.81□□□□□ -0.52
VPS4A-204ENST00000566354 TOMM34Q15785 309 aaPredicted RBP11.81□□□□□ -0.52
VPS4A-204ENST00000566354 PDSS1Q5T2R2 415 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 TMEM17Q86X19 198 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 ZBTB8AQ96BR9 441 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 CMKLR1Q99788 373 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 NKX3-1Q99801 234 aaPredicted RBP11.81□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF251Q9BRH9 671 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 RTN4RQ9BZR6 473 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 BARX1Q9HBU1 254 aaPredicted RBP11.81□□□□□ -0.52
VPS4A-204ENST00000566354 TAS2R3Q9NYW6 316 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 CGGBP1Q9UFW8 167 aaPredicted RBP11.81□□□□□ -0.52
VPS4A-204ENST00000566354 FARSAQ9Y285 508 aaKnown RBP11.81□□□□□ -0.52
VPS4A-204ENST00000566354 LRP12Q9Y561 859 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 ALPK2Q86TB3 2170 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 GMFGO60234 142 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 HLA-AP01891 365 aaKnown RBP11.81□□□□□ -0.52
VPS4A-204ENST00000566354 GP1BBP13224 206 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 CTLA4P16410 223 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 PGCP20142 388 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 CNR1P21554 472 aa11.81□□□□□ -0.52
VPS4A-204ENST00000566354 DNASE1L1P49184 302 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms