RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 TRIM25Q14258 630 aaKnown RBP18.89■□□□□ 0.61
CLN3-215ENST00000565236 FAM98BQ52LJ0 330 aaKnown RBP18.89■□□□□ 0.61
CLN3-215ENST00000565236 ESCO2Q56NI9 601 aa18.89■□□□□ 0.61
CLN3-215ENST00000565236 ZNF362Q5T0B9 420 aaPredicted RBP18.89■□□□□ 0.61
CLN3-215ENST00000565236 LCN8Q6JVE9 175 aa18.89■□□□□ 0.61
CLN3-215ENST00000565236 BPIFB2Q8N4F0 458 aa18.89■□□□□ 0.61
CLN3-215ENST00000565236 OR8D4Q8NGM9 314 aa18.89■□□□□ 0.61
CLN3-215ENST00000565236 SLCO4A1Q96BD0 722 aa18.89■□□□□ 0.61
CLN3-215ENST00000565236 SUCNR1Q9BXA5 334 aa18.89■□□□□ 0.61
CLN3-215ENST00000565236 TSSK6Q9BXA6 273 aa18.89■□□□□ 0.61
CLN3-215ENST00000565236 MMP26Q9NRE1 261 aa18.89■□□□□ 0.61
CLN3-215ENST00000565236 POLR3KQ9Y2Y1 108 aaPredicted RBP18.89■□□□□ 0.61
CLN3-215ENST00000565236 IGHV3-64DA0A0J9YX35 117 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 LRRC30A6NM36 301 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 M0R135 149 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 CYB5R3P00387 301 aaPredicted RBP18.88■□□□□ 0.61
CLN3-215ENST00000565236 HLA-DPB1P04440 258 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 FPR2P25090 351 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 PRSS12P56730 875 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 SEC61A1P61619 476 aaKnown RBP18.88■□□□□ 0.61
CLN3-215ENST00000565236 MICAQ29983 383 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 OR2T5Q6IEZ7 315 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 PGAP1Q75T13 922 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 MOGAT3Q86VF5 341 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 LNX2Q8N448 690 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 SLC37A3Q8NCC5 494 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 OR51L1Q8NGJ5 315 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 OR2T29Q8NH02 315 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 SPRYD4Q8WW59 207 aaPredicted RBP18.88■□□□□ 0.61
CLN3-215ENST00000565236 POP5Q969H6 163 aaKnown RBP18.88■□□□□ 0.61
CLN3-215ENST00000565236 ZNF799Q96GE5 643 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 REEP1Q9H902 201 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 BAIAP2Q9UQB8 552 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 SAMHD1Q9Y3Z3 626 aaKnown RBP18.88■□□□□ 0.61
CLN3-215ENST00000565236 U3KQV3 271 aa18.88■□□□□ 0.61
CLN3-215ENST00000565236 F5H0A9 414 aaPredicted RBP18.87■□□□□ 0.61
CLN3-215ENST00000565236 TRAPPC2LH3BP13 241 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 TRIM77I1YAP6 450 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 ZNF205O95201 554 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 CALB2P22676 271 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 RPS27P42677 84 aaKnown RBP18.87■□□□□ 0.61
CLN3-215ENST00000565236 MS4A2Q01362 244 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 C12orf54Q6X4T0 127 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 MRPL21Q7Z2W9 205 aaKnown RBP18.87■□□□□ 0.61
CLN3-215ENST00000565236 C1orf87Q8N0U7 546 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 CCDC197Q8NCU1 140 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 OR10S1Q8NGN2 331 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 OR9Q1Q8NGQ5 310 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 ZNRF4Q8WWF5 429 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 SLC6A7Q99884 636 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 TMEM165Q9HC07 324 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 AUP1Q9Y679 476 aa18.87■□□□□ 0.61
CLN3-215ENST00000565236 A0A1B0GWJ7 208 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 CEACAM18A8MTB9 384 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 FAM107AO95990 144 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 WNT2P09544 360 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 CPT2P23786 658 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 FMO3P31513 532 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 ZNF154Q13106 437 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 ZNF181Q2M3W8 571 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 DEFB108BQ8NET1 73 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 OR2T33Q8NG76 320 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 RBM4Q9BWF3 364 aaKnown RBP18.86■□□□□ 0.61
CLN3-215ENST00000565236 DGCR6LQ9BY27 220 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 VNN3Q9NY84 501 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 OR5V1Q9UGF6 321 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 LRCH1Q9Y2L9 728 aa18.86■□□□□ 0.61
CLN3-215ENST00000565236 A8MXK9 166 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 SOX14O95416 240 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 FSHBP01225 129 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 IRF2P14316 349 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 RPS2P15880 293 aaKnown RBP18.85■□□□□ 0.61
CLN3-215ENST00000565236 ZNF12P17014 697 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 ACTG1P63261 375 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 CRMP1Q14194 572 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 TAF13Q15543 124 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 LYPD4Q6UWN0 246 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 DCXRQ7Z4W1 244 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 CELF2-AS1Q8N7Q2 184 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 FAM216AQ8WUB2 273 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 C22orf15Q8WYQ4 148 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 LRGUKQ96M69 825 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 MRI1Q9BV20 369 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 DDX28Q9NUL7 540 aaKnown RBP18.85■□□□□ 0.61
CLN3-215ENST00000565236 MIOXQ9UGB7 285 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 PRPF19Q9UMS4 504 aaKnown RBP18.85■□□□□ 0.61
CLN3-215ENST00000565236 INSIG2Q9Y5U4 225 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 COMMD3-BMI1R4GMX3 469 aa18.85■□□□□ 0.61
CLN3-215ENST00000565236 IFNGP01579 166 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 GYPBP06028 91 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 SPARCP09486 303 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 T-ENOLP0DO92 83 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 GATA4P43694 442 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 ENTPD1P49961 510 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 RAD23AP54725 363 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 ARMCX4Q5H9R4 360 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 DRAM2Q6UX65 266 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 ZNF511Q8NB15 262 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 OR11L1Q8NGX0 322 aa18.84■□□□□ 0.61
CLN3-215ENST00000565236 OR4Q3Q8NH05 313 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms