RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 OR6N2Q8NGY6 317 aa11.39□□□□□ -0.59
CLK3-216ENST00000564468 SLAMF6Q96DU3 332 aa11.39□□□□□ -0.59
CLK3-216ENST00000564468 ZNF582Q96NG8 517 aaPredicted RBP11.39□□□□□ -0.59
CLK3-216ENST00000564468 COPS4Q9BT78 406 aa11.39□□□□□ -0.59
CLK3-216ENST00000564468 POFUT1Q9H488 388 aa11.39□□□□□ -0.59
CLK3-216ENST00000564468 TOR3AQ9H497 397 aa11.39□□□□□ -0.59
CLK3-216ENST00000564468 SP140LQ9H930 580 aa11.39□□□□□ -0.59
CLK3-216ENST00000564468 MSL2Q9HCI7 577 aa11.39□□□□□ -0.59
CLK3-216ENST00000564468 KRT84Q9NSB2 600 aa11.39□□□□□ -0.59
CLK3-216ENST00000564468 CENPMQ9NSP4 180 aa11.39□□□□□ -0.59
CLK3-216ENST00000564468 TMEM160Q9NX00 188 aa11.39□□□□□ -0.59
CLK3-216ENST00000564468 KCNS2Q9ULS6 477 aa11.39□□□□□ -0.59
CLK3-216ENST00000564468 WNK2Q9Y3S1 2297 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 LOC100289279A0A1B0GTE1 492 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 LRP5LA4QPB2 252 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 RNF212BA8MTL3 300 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 LMX1BO60663 402 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 CRLF1O75462 422 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 OTX1P32242 354 aaPredicted RBP11.38□□□□□ -0.59
CLK3-216ENST00000564468 RPS27P42677 84 aaKnown RBP11.38□□□□□ -0.59
CLK3-216ENST00000564468 GRB2P62993 217 aaKnown RBP11.38□□□□□ -0.59
CLK3-216ENST00000564468 EIF2B1Q14232 305 aaKnown RBP11.38□□□□□ -0.59
CLK3-216ENST00000564468 SNAPC1Q16533 368 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 TMEM255AQ5JRV8 349 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 PLBD1Q6P4A8 553 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 LYPD4Q6UWN0 246 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 AMIGO2Q86SJ2 522 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 OR8G5Q8NG78 346 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 OR2Z1Q8NG97 314 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 OR13G1Q8NGZ3 307 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 GTF3AQ92664 365 aaKnown RBP11.38□□□□□ -0.59
CLK3-216ENST00000564468 RAB1CQ92928 201 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 CENPNQ96H22 339 aaPredicted RBP11.38□□□□□ -0.59
CLK3-216ENST00000564468 KCNJ15Q99712 375 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 OSBPL10Q9BXB5 764 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 MED20Q9H944 212 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 MARCH7Q9H992 704 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 IL19Q9UHD0 177 aa11.38□□□□□ -0.59
CLK3-216ENST00000564468 IQCF6A8MYZ5 107 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 IFNL4K9M1U5 179 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 TGFAP01135 160 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 ZNF16P17020 682 aaPredicted RBP11.37□□□□□ -0.59
CLK3-216ENST00000564468 HSD11B1P28845 292 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 RPS7P62081 194 aaKnown RBP11.37□□□□□ -0.59
CLK3-216ENST00000564468 HLXQ14774 488 aaPredicted RBP11.37□□□□□ -0.59
CLK3-216ENST00000564468 PTGES3Q15185 160 aaKnown RBP11.37□□□□□ -0.59
CLK3-216ENST00000564468 TRIP10Q15642 601 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 KLHL12Q53G59 568 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 TMEM236Q5W0B7 351 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 OR2T2Q6IF00 324 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 ZFP1Q6P2D0 407 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 PGAP1Q75T13 922 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 MRPL21Q7Z2W9 205 aaKnown RBP11.37□□□□□ -0.59
CLK3-216ENST00000564468 DPY19L4Q7Z388 723 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 CPOQ8IVL8 374 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 OR5AS1Q8N127 324 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 ZNF283Q8N7M2 679 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 ZNF454Q8N9F8 522 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 LINC01356Q8N9X3 169 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 OR10S1Q8NGN2 331 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 ST7LQ8TDW4 575 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 LRTOMTQ8WZ04 291 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 CCL17Q92583 94 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 MSI2Q96DH6 328 aaKnown RBP11.37□□□□□ -0.59
CLK3-216ENST00000564468 GABARAPL1Q9H0R8 117 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 OPA3Q9H6K4 179 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 TMEM100Q9NV29 134 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 TVP23BQ9NYZ1 205 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 LPAR3Q9UBY5 353 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 CDC42EP3Q9UKI2 254 aa11.37□□□□□ -0.59
CLK3-216ENST00000564468 NOP16Q9Y3C1 178 aaKnown RBP11.37□□□□□ -0.59
CLK3-216ENST00000564468 ANPEPP15144 967 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 PCMT1P22061 227 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 SRP9P49458 86 aaKnown RBP11.36□□□□□ -0.59
CLK3-216ENST00000564468 PRKXP51817 358 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 ACTR3P61158 418 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 GK2Q14410 553 aaPredicted RBP11.36□□□□□ -0.59
CLK3-216ENST00000564468 CHRFAM7AQ494W8 412 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 LCN1P1Q5VSP4 162 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 KDM4DQ6B0I6 523 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 Q6ZR03 302 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 NAA40Q86UY6 237 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.36□□□□□ -0.59
CLK3-216ENST00000564468 TIGD4Q8IY51 512 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 CLDND2Q8NHS1 167 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 RNF133Q8WVZ7 376 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 RAB39BQ96DA2 213 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 ZMYND19Q96E35 227 aaPredicted RBP11.36□□□□□ -0.59
CLK3-216ENST00000564468 C1orf159Q96HA4 380 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 SLC30A2Q9BRI3 323 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 ABHD6Q9BV23 337 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 SLC22A4Q9H015 551 aa11.36□□□□□ -0.59
CLK3-216ENST00000564468 H2AFY2Q9P0M6 372 aaPredicted RBP11.36□□□□□ -0.59
CLK3-216ENST00000564468 B4DSR2 109 aa11.35□□□□□ -0.59
CLK3-216ENST00000564468 XRCC2O43543 280 aa11.35□□□□□ -0.59
CLK3-216ENST00000564468 LYNP07948 512 aa11.35□□□□□ -0.59
CLK3-216ENST00000564468 H2BFMP0C1H6 154 aa11.35□□□□□ -0.59
CLK3-216ENST00000564468 HNF1AP20823 631 aa11.35□□□□□ -0.59
CLK3-216ENST00000564468 IGFBP5P24593 272 aa11.35□□□□□ -0.59
CLK3-216ENST00000564468 RAD23AP54725 363 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms