RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 FAM107BQ9H098 131 aa14.42□□□□□ -0.1
VPS9D1-203ENST00000563798 DDX28Q9NUL7 540 aaKnown RBP14.42□□□□□ -0.1
VPS9D1-203ENST00000563798 IL20Q9NYY1 176 aa14.42□□□□□ -0.1
VPS9D1-203ENST00000563798 OR5V1Q9UGF6 321 aa14.42□□□□□ -0.1
VPS9D1-203ENST00000563798 CDH10Q9Y6N8 788 aa14.42□□□□□ -0.1
VPS9D1-203ENST00000563798 F5H5K5 113 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 F5H5P2 479 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 BHLHE40O14503 412 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 PTBP3O95758 552 aaKnown RBP14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 CYB5R3P00387 301 aaPredicted RBP14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 OTX1P32242 354 aaPredicted RBP14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 CD80P33681 288 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 CD200P41217 278 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 MAGEA2P43356 314 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 RAD23AP54725 363 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 TPTEP56180 551 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 DBPQ10586 325 aaPredicted RBP14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 MAB21L1Q13394 359 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 ZNF770Q6IQ21 691 aaPredicted RBP14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 C16orf89Q6UX73 402 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 C9orf139Q6ZV77 190 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 PIGWQ7Z7B1 504 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 MOGAT3Q86VF5 341 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 KLBQ86Z14 1044 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 C3orf56Q8N813 242 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 OR52E2Q8NGJ4 325 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 C22orf15Q8WYQ4 148 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 TMEM246Q9BRR3 403 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 SSBP3Q9BWW4 388 aaPredicted RBP14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 WDR76Q9H967 626 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 ZMAT3Q9HA38 289 aaKnown RBP14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 ARL8BQ9NVJ2 186 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 ZNF69Q9UC07 566 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 ARL2BPQ9Y2Y0 163 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 LYVE1Q9Y5Y7 322 aa14.41□□□□□ -0.1
VPS9D1-203ENST00000563798 LCATP04180 440 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 MALLQ13021 153 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 PCK2Q16822 640 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 LRRN1Q6UXK5 716 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 RBMS3Q6XE24 437 aaKnown RBP14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 NAA40Q86UY6 237 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 SIGLECL1Q8N7X8 197 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 BHLHE23Q8NDY6 225 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 OR4C15Q8NGM1 316 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 OR10S1Q8NGN2 331 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 OR2T4Q8NH00 348 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 RAB40AQ8WXH6 277 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 UPRTQ96BW1 309 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 NEIL1Q96FI4 390 aaPredicted RBP14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 PLEKHA8Q96JA3 519 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 SLC22A4Q9H015 551 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 FN3KQ9H479 309 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 ACTR3BQ9P1U1 418 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 NOP16Q9Y3C1 178 aaKnown RBP14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 PPIAL4AQ9Y536 164 aa14.4□□□□□ -0.1
VPS9D1-203ENST00000563798 IGHV2-70DA0A0C4DH43 119 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 CLDN34H7C241 214 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 M0R135 149 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 HLA-DQA2P01906 255 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 HLA-DPB1P04440 258 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 HKR1P10072 659 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 RPS2P15880 293 aaKnown RBP14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 ZNF823P16415 610 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 PRTN3P24158 256 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 AWAT1Q58HT5 328 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 SLC35F1Q5T1Q4 408 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 RASSF6Q6ZTQ3 369 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 PGAP1Q75T13 922 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 DEFB107AQ8IZN7 70 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 LNX2Q8N448 690 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 PLPP7Q8NBV4 271 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 OR52L1Q8NGH7 329 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 SGMS2Q8NHU3 365 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 SPTSSAQ969W0 71 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 SLCO4A1Q96BD0 722 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 ZNF799Q96GE5 643 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 BTBD10Q9BSF8 475 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 EGLN3Q9H6Z9 239 aa14.39□□□□□ -0.11
VPS9D1-203ENST00000563798 KIR2DS1A0A191URI9 304 aa14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 DCTN3O75935 186 aa14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 PLATP00750 562 aa14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 MNAT1P51948 309 aa14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 GNB2P62879 340 aa14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 CLEC12AQ5QGZ9 265 aa14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 DRAM2Q6UX65 266 aa14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 BTNL3Q6UXE8 466 aa14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 DCDC5Q6ZRR9 648 aa14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 NLRC3Q7RTR2 1065 aa14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 ZNRF4Q8WWF5 429 aa14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 C1orf147Q96MC9 270 aaPredicted RBP14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 ZNF48Q96MX3 618 aaPredicted RBP14.38□□□□□ -0.11
VPS9D1-203ENST00000563798 CD300LBA8K4G0 201 aa14.37□□□□□ -0.11
VPS9D1-203ENST00000563798 TNFRSF11BO00300 401 aa14.37□□□□□ -0.11
VPS9D1-203ENST00000563798 GMDSO60547 372 aa14.37□□□□□ -0.11
VPS9D1-203ENST00000563798 ZNF205O95201 554 aa14.37□□□□□ -0.11
VPS9D1-203ENST00000563798 GASTP01350 101 aa14.37□□□□□ -0.11
VPS9D1-203ENST00000563798 IRF2P14316 349 aa14.37□□□□□ -0.11
VPS9D1-203ENST00000563798 EGR1P18146 543 aa14.37□□□□□ -0.11
VPS9D1-203ENST00000563798 PYCR1P32322 319 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms