RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 FOXJ2Q9P0K8 574 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 ING4Q9UNL4 249 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 A0A1B0GTI1 187 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 A0A1W2PNU3 283 aaPredicted RBP9.39□□□□□ -0.91
CUX1-217ENST00000558836 WIPF3A6NGB9 483 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 ZNF878C9JN71 531 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 ICMTO60725 284 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 SIX6O95475 246 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 DBHP09172 617 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 ACP1P24666 158 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 BDKRB2P30411 391 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 CX3CR1P49238 355 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 CSRP2Q16527 193 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 ALKBH2Q6NS38 261 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 DEGS2Q6QHC5 323 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 C9orf62Q8N4C0 152 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 OR5D18Q8NGL1 313 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 ROBO4Q8WZ75 1007 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 SEH1LQ96EE3 360 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 LIN37Q96GY3 246 aaPredicted RBP9.39□□□□□ -0.91
CUX1-217ENST00000558836 TINAGL1Q9GZM7 467 aaPredicted RBP9.39□□□□□ -0.91
CUX1-217ENST00000558836 ACTR6Q9GZN1 396 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 DEPPQ9NTK1 212 aa9.39□□□□□ -0.91
CUX1-217ENST00000558836 A0A1B0GVI7 797 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 A0A1W2PP11 408 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 PATE4P0C8F1 98 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 SULT1A3P0DMM9 295 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 SULT1A4P0DMN0 295 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 VSIG10L2P0DP72 767 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 S100A1P23297 94 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 CSNK1A1P48729 337 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 WIPI1Q5MNZ9 446 aaPredicted RBP9.38□□□□□ -0.91
CUX1-217ENST00000558836 C6orf15Q6UXA7 325 aaPredicted RBP9.38□□□□□ -0.91
CUX1-217ENST00000558836 CHMP1BQ7LBR1 199 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 OR1M1Q8NGA1 313 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 PCNPQ8WW12 178 aaKnown RBP9.38□□□□□ -0.91
CUX1-217ENST00000558836 SNAPC3Q92966 411 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 HYLS1Q96M11 299 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 PNRC2Q9NPJ4 139 aaKnown RBP9.38□□□□□ -0.91
CUX1-217ENST00000558836 P4HTMQ9NXG6 502 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 TMA7Q9Y2S6 64 aaKnown RBP9.38□□□□□ -0.91
CUX1-217ENST00000558836 PCSK5Q92824 1860 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 MAP1BP46821 2468 aaKnown RBP9.38□□□□□ -0.91
CUX1-217ENST00000558836 RIF1Q5UIP0 2472 aaKnown RBP9.38□□□□□ -0.91
CUX1-217ENST00000558836 PINLYPA6NC86 204 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 M0R296 226 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 ZNHIT1O43257 154 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 P04436 131 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 SP9P0CG40 484 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 FSTP19883 344 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 MRPS10P82664 201 aaKnown RBP9.38□□□□□ -0.91
CUX1-217ENST00000558836 UNC119Q13432 240 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 HIST3H3Q16695 136 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 NKPD1Q17RQ9 610 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 OLFML2AQ68BL7 652 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 NLRC3Q7RTR2 1065 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 FGD2Q7Z6J4 655 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 ADGRE4PQ86SQ3 457 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 CD163Q86VB7 1156 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 ANGPTL5Q86XS5 388 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 BEST3Q8N1M1 668 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 GALNT16Q8N428 558 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 PAQR4Q8N4S7 273 aaPredicted RBP9.38□□□□□ -0.91
CUX1-217ENST00000558836 MEIOBQ8N635 442 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 GVQW1Q8N7I0 195 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 SH2D2AQ9NP31 389 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 DLL4Q9NR61 685 aa9.38□□□□□ -0.91
CUX1-217ENST00000558836 EIF3KQ9UBQ5 218 aaKnown RBP9.38□□□□□ -0.91
CUX1-217ENST00000558836 NAP1L6A6NFF2 107 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 C9orf172C9J069 976 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 CBR3O75828 277 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 NDUFB6O95139 128 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 CD63P08962 238 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 LIPCP11150 499 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 ZNF17P17021 662 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 HTR2BP41595 481 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 SUCLG1P53597 346 aaKnown RBP9.37□□□□□ -0.91
CUX1-217ENST00000558836 ARPC4P59998 168 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 C2orf68Q2NKX9 166 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 ACER2Q5QJU3 275 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 TMEM81Q6P7N7 255 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 LIX1LQ8IVB5 337 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 ZNF101Q8IZC7 436 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 OR9K2Q8NGE7 335 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 THRSPQ92748 146 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 NICN1Q9BSH3 213 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 ZNF436Q9C0F3 470 aaPredicted RBP9.37□□□□□ -0.91
CUX1-217ENST00000558836 MGAT4CQ9UBM8 478 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 MEIKINA0A087WXM9 373 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 TNFRSF10AO00220 468 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 TLX3O43711 291 aaPredicted RBP9.37□□□□□ -0.91
CUX1-217ENST00000558836 IGHV3-9P01782 118 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 GNB3P16520 340 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 ZNF20P17024 532 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 DNASE1P24855 282 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 ZNF93P35789 620 aaPredicted RBP9.37□□□□□ -0.91
CUX1-217ENST00000558836 GUCA1AP43080 201 aaPredicted RBP9.37□□□□□ -0.91
CUX1-217ENST00000558836 PSMA6P60900 246 aaKnown RBP9.37□□□□□ -0.91
CUX1-217ENST00000558836 SCGB2B2Q4G0G5 96 aa9.37□□□□□ -0.91
CUX1-217ENST00000558836 AWAT2Q6E213 333 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms