RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 OR52E2Q8NGJ4 325 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 OR9Q1Q8NGQ5 310 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 OR13C2Q8NGS9 318 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 OR2T4Q8NH00 348 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 CNIH3Q8TBE1 160 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 NEU4Q8WWR8 484 aaPredicted RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 RORBQ92753 470 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 GGHQ92820 318 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 TAAR8Q969N4 342 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 CPNE4Q96A23 557 aaPredicted RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 PNPLA2Q96AD5 504 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 C14orf79Q96F83 325 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 SCMH1Q96GD3 660 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 SFXN2Q96NB2 322 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 OXGR1Q96P68 337 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 RBP7Q96R05 134 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 OR5B2Q96R09 309 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 ALG12Q9BV10 488 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 KATNB1Q9BVA0 655 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 PPIL3Q9H2H8 161 aaKnown RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 TXNIPQ9H3M7 391 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 PROK2Q9HC23 129 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 MCCC2Q9HCC0 563 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 FGF20Q9NP95 211 aaPredicted RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 CHST11Q9NPF2 352 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 SLCO1C1Q9NYB5 712 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 DKK2Q9UBU2 259 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 PLEKHB1Q9UF11 243 aaPredicted RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 OR14J1Q9UGF5 321 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 FBXL2Q9UKC9 423 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 STRAPQ9Y3F4 350 aaKnown RBP4.52□□□□□ -1.69
LDLR-209ENST00000558528 IER3IP1Q9Y5U9 82 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 TMEM14AQ9Y6G1 99 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 KNL1Q8NG31 2342 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 UNC13CQ8NB66 2214 aa4.52□□□□□ -1.69
LDLR-209ENST00000558528 TRAV27A0A087WT01 109 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 ARPC4-TTLL3A0A0A6YYG9 625 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 A0A1W2PNV4 684 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 OR2M5A3KFT3 312 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 CXorf65A6NEN9 183 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 OR6C65A6NJZ3 312 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 ZNF99A8MXY4 864 aaPredicted RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 FTCDNL1E5RQL4 147 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 NPIPA5E9PKD4 350 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 TRIM77I1YAP6 450 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 K7ENP7 123 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 ZNF701M0R085 212 aaPredicted RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 GPR171O14626 319 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 MYL12BO14950 172 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 PRKYO43930 277 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 TSC22D2O75157 780 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 ENTPD6O75354 484 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 WBP4O75554 376 aaKnown RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 TRMUO75648 421 aaKnown RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 GLCEO94923 617 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 GLSO94925 669 aaPredicted RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 NDUFB4O95168 129 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 SYNGR4O95473 234 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 PPP1R3DO95685 299 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 RAB36O95755 333 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 TACSTD2P09758 323 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 DBTP11182 482 aaKnown RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 EPHA2P29317 976 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 FMO3P31513 532 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 AQP2P41181 271 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 DNASE1L1P49184 302 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 TNFSF10P50591 281 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 TMPRSS3P57727 454 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 ERVK-25P63136 954 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 LTBQ06643 244 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 RPL18Q07020 188 aaKnown RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 ST3GAL4Q11206 333 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 MYBPHQ13203 477 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 CTU2Q2VPK5 515 aaKnown RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 TIMM50Q3ZCQ8 353 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 THEM4Q5T1C6 240 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 AADACL4Q5VUY2 407 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 GGNBP1Q5YKI7 109 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 HBMQ6B0K9 141 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 ZNF544Q6NX49 715 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 TEX38Q6PEX7 206 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 Q6ZPB1 254 aaPredicted RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 KCTD8Q6ZWB6 473 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 SHFQ7M4L6 423 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 HAPLN4Q86UW8 402 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 PM20D2Q8IYS1 436 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 ELMOD2Q8IZ81 293 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 ZNF611Q8N823 705 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 FAM83FQ8NEG4 500 aaPredicted RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 ATP6V1C2Q8NEY4 427 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 PROKR2Q8NFJ6 384 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 OR4Q3Q8NH05 313 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 OR2V1Q8NHB1 315 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 ZNF420Q8TAQ5 688 aaPredicted RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 ABTB1Q969K4 478 aaPredicted RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 SARAFQ96BY9 339 aa4.51□□□□□ -1.69
LDLR-209ENST00000558528 DGCR14Q96DF8 476 aaKnown RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 BSCL2Q96G97 398 aaPredicted RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 ZNF582Q96NG8 517 aaPredicted RBP4.51□□□□□ -1.69
LDLR-209ENST00000558528 SIGLEC12Q96PQ1 595 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms