RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 TAF13Q15543 124 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 SLC25A47Q6Q0C1 308 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 PGAP1Q75T13 922 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 OR2W3Q7Z3T1 314 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 CCDC54Q8NEL0 328 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 OR2AK2Q8NG84 335 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 OR51S1Q8NGJ8 323 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 IFI44Q8TCB0 444 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 ELP5Q8TE02 316 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 SEH1LQ96EE3 360 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 ELMOD3Q96FG2 381 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 OR5B2Q96R09 309 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 PRRT1Q99946 306 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 SLX1AQ9BQ83 275 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 KRTAP4-8Q9BYQ9 185 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 SLC2A8Q9NY64 477 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 PIPOXQ9P0Z9 390 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 CGGBP1Q9UFW8 167 aaPredicted RBP6.46□□□□□ -1.38
VPS13C-206ENST00000558338 GDF2Q9UK05 429 aaPredicted RBP6.46□□□□□ -1.38
VPS13C-206ENST00000558338 SLC5A6Q9Y289 635 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 POLR3KQ9Y2Y1 108 aaPredicted RBP6.46□□□□□ -1.38
VPS13C-206ENST00000558338 MRPS18BQ9Y676 258 aaKnown RBP6.46□□□□□ -1.38
VPS13C-206ENST00000558338 XIRP2A4UGR9 3374 aa6.46□□□□□ -1.38
VPS13C-206ENST00000558338 RANBP2P49792 3224 aaKnown RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 IGKV1D-43A0A0B4J1Z2 117 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 PLSCR5A0PG75 271 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 OR6C65A6NJZ3 312 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 B9A039 149 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 H3BUI4 141 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 CER1O95813 267 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 TTRP02766 147 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 AMY2AP04746 511 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 CD63P08962 238 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 UBBP0CG47 229 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 VSIG10L2P0DP72 767 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 NFYAP23511 347 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 GUCA1AP43080 201 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 GABREP78334 506 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 FGL1Q08830 312 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 EXOSC2Q13868 293 aaKnown RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 OPCMLQ14982 345 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 PCOLCEQ15113 449 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 GRK1Q15835 563 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 HLA-BQ31612 363 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 CLVS2Q5SYC1 327 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 OTPQ5XKR4 325 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 C11orf88Q6PI97 169 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 TSSK4Q6SA08 328 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 NHLRC1Q6VVB1 395 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 ZNF813Q6ZN06 617 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 CHMP1BQ7LBR1 199 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 LYPD6Q86Y78 171 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 CCDC28AQ8IWP9 274 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 GTPBP8Q8N3Z3 284 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 AGBL5Q8NDL9 886 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 OR51A2Q8NGJ7 313 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 M1APQ8TC57 530 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 AQP3Q92482 292 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 PPP1R14AQ96A00 147 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 FGGYQ96C11 551 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 NPAS1Q99742 590 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 NAA11Q9BSU3 229 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 DPCDQ9BVM2 203 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 OPN4Q9UHM6 478 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 KIF25Q9UIL4 384 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 PLEKHA6Q9Y2H5 1048 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 KCNMB2Q9Y691 235 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 SPTBN5Q9NRC6 3674 aaKnown RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 PCNX3Q9H6A9 2034 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 LEUTXA8MZ59 168 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 D6RAR5 112 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 GOSR2O14653 212 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 EFNA2O43921 213 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 EIF1BO60739 113 aaKnown RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 RP2O75695 350 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 TOXO94900 526 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 VAMP5O95183 116 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 IGHEP01854 428 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 CHRM2P08172 466 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 ZNF17P17021 662 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 CCL1P22362 96 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 AGTR1P30556 359 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 P2RY4P51582 365 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 AP2S1P53680 142 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 P2RX3P56373 397 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 CLDN6P56747 220 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 FOXL2P58012 376 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 SEC61A1P61619 476 aaKnown RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 LSM6P62312 80 aaKnown RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 SUMO1P63165 101 aaKnown RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 ACTBL2Q562R1 376 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 RNASE10Q5GAN6 216 aaKnown RBP6.45□□□□□ -1.38
VPS13C-206ENST00000558338 ZNF529Q6P280 563 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 CORO6Q6QEF8 472 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 C3P1Q6ZMU1 363 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 IDO2Q6ZQW0 420 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 DOK3Q7L591 496 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 BIVMQ86UB2 503 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 GPAT4Q86UL3 456 aa6.45□□□□□ -1.38
VPS13C-206ENST00000558338 BPIFB2Q8N4F0 458 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms