RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CCDC107Q8WV48 283 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 TMEM234Q8WY98 164 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 ROBO4Q8WZ75 1007 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 ST8SIA2Q92186 375 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 EDEM2Q9BV94 578 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 SHARPINQ9H0F6 387 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 CYB5R1Q9UHQ9 305 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 PFDN2Q9UHV9 154 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 LHFPL6Q9Y693 200 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 MYO7BQ6PIF6 2116 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 A0A0A6YYD4 124 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 ANKUB1A6NFN9 424 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 SSX5O60225 188 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 ERCC1P07992 297 aaPredicted RBP11.44□□□□□ -0.58
LDLR-207ENST00000558013 FGF2P09038 288 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 GLULP15104 373 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 MMP16P51512 607 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 CLDN6P56747 220 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 QRFPP83859 136 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 C17orf67Q0P5P2 114 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 MPPED2Q15777 294 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 TMEM244Q5VVB8 128 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 NAA40Q86UY6 237 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 OR1M1Q8NGA1 313 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 MFSD8Q8NHS3 518 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 A0A1B0GTI1 187 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 CPED1A4D0V7 1026 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 APOC3P02656 99 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 HEXBP07686 556 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 CALCRP30988 508 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 JMJD6Q6NYC1 403 aaPredicted RBP11.44□□□□□ -0.58
LDLR-207ENST00000558013 DTX1Q86Y01 620 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 OR5D18Q8NGL1 313 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 THRSPQ92748 146 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 FAM71F1Q96KD3 344 aaPredicted RBP11.44□□□□□ -0.58
LDLR-207ENST00000558013 VRK1Q99986 396 aaPredicted RBP11.44□□□□□ -0.58
LDLR-207ENST00000558013 PPA2Q9H2U2 334 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 ASH2LQ9UBL3 628 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 UPB1Q9UBR1 384 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 CACNA1EQ15878 2313 aa11.44□□□□□ -0.58
LDLR-207ENST00000558013 MEGF11A6BM72 1044 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 RNF222A6NCQ9 220 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 TRIM77I1YAP6 450 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 SULT1C2O00338 296 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 SOCS1O15524 211 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 OR2J2O76002 312 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 STK17BO94768 372 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 HPP00738 406 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 SRFP11831 508 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 GLB1P16278 677 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 ZBTB25P24278 435 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 DAP3P51398 398 aaKnown RBP11.43□□□□□ -0.58
LDLR-207ENST00000558013 IL13RA1P78552 427 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 AWAT2Q6E213 333 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 UNQ6126/PRO20091Q6UXV3 157 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 SLC51BQ86UW2 128 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 ZNF101Q8IZC7 436 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 PLPP5Q8NEB5 264 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 OR10H5Q8NGA6 315 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 OR10K1Q8NGX5 313 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 POC1BQ8TC44 478 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 NPRL2Q8WTW4 380 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 OR6C1Q96RD1 312 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 SCPEP1Q9HB40 452 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 POLR1DQ9Y2S0 133 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 NCOA6Q14686 2063 aaPredicted RBP11.43□□□□□ -0.58
LDLR-207ENST00000558013 PRRC2CQ9Y520 2896 aaKnown RBP11.43□□□□□ -0.58
LDLR-207ENST00000558013 TUBAL3A6NHL2 446 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 A6NIZ1 184 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 VSTM2BA6NLU5 285 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 MELTFP08582 738 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 OR3A4PP47883 348 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 RAP1BP61224 184 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 RAP1AP62834 184 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 ABHD12BQ7Z5M8 362 aaPredicted RBP11.43□□□□□ -0.58
LDLR-207ENST00000558013 NAXDQ8IW45 347 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 BHLHE23Q8NDY6 225 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 MARCH1Q8TCQ1 289 aa11.43□□□□□ -0.58
LDLR-207ENST00000558013 MRPS24Q96EL2 167 aaKnown RBP11.43□□□□□ -0.58
LDLR-207ENST00000558013 WDR77Q9BQA1 342 aaPredicted RBP11.43□□□□□ -0.58
LDLR-207ENST00000558013 C13orf42A0A1B0GVH6 325 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 C9orf170A2RU37 121 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 METTL21EPA6NDL7 271 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 OR6C76A6NM76 312 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 AQP8O94778 261 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 UBCP0CG48 685 aaKnown RBP11.42□□□□□ -0.58
LDLR-207ENST00000558013 ZNF17P17021 662 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 AKR1C2P52895 323 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 AKR1C1Q04828 323 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 SSBP1Q04837 148 aaKnown RBP11.42□□□□□ -0.58
LDLR-207ENST00000558013 BAMBIQ13145 260 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 NKAIN1Q4KMZ8 207 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 PLAC9Q5JTB6 97 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 MAFIPQ8WZ33 124 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 OR5B2Q96R09 309 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 ZNF471Q9BX82 626 aaPredicted RBP11.42□□□□□ -0.58
LDLR-207ENST00000558013 RAB22AQ9UL26 194 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 D6RAR5 112 aa11.42□□□□□ -0.58
LDLR-207ENST00000558013 ZNF93P35789 620 aaPredicted RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms