RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TPPPO94811 219 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 CDAP32320 146 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 GPR85P60893 370 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 AWAT2Q6E213 333 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.01□□□□□ -0.65
LDLR-205ENST00000557933 C19orf47Q8N9M1 422 aaKnown RBP11.01□□□□□ -0.65
LDLR-205ENST00000557933 RNF128Q8TEB7 428 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 SEC61A2Q9H9S3 476 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 CD207Q9UJ71 328 aa11.01□□□□□ -0.65
LDLR-205ENST00000557933 SLC33A1O00400 549 aaPredicted RBP11□□□□□ -0.65
LDLR-205ENST00000557933 LRP3O75074 770 aa11□□□□□ -0.65
LDLR-205ENST00000557933 OR2F2O95006 317 aa11□□□□□ -0.65
LDLR-205ENST00000557933 WDPCPO95876 746 aa11□□□□□ -0.65
LDLR-205ENST00000557933 CD1AP06126 327 aa11□□□□□ -0.65
LDLR-205ENST00000557933 HNRNPA2B1P22626 353 aaKnown RBP11□□□□□ -0.65
LDLR-205ENST00000557933 PPT1P50897 306 aa11□□□□□ -0.65
LDLR-205ENST00000557933 FOXK1P85037 733 aa11□□□□□ -0.65
LDLR-205ENST00000557933 POU3F1Q03052 451 aaPredicted RBP11□□□□□ -0.65
LDLR-205ENST00000557933 EGR3Q06889 387 aa11□□□□□ -0.65
LDLR-205ENST00000557933 SMAD4Q13485 552 aaKnown RBP11□□□□□ -0.65
LDLR-205ENST00000557933 OR2F1Q13607 317 aa11□□□□□ -0.65
LDLR-205ENST00000557933 IGSF11Q5DX21 431 aa11□□□□□ -0.65
LDLR-205ENST00000557933 PPP1R3BQ86XI6 285 aa11□□□□□ -0.65
LDLR-205ENST00000557933 EIF4E3Q8N5X7 224 aaKnown RBP11□□□□□ -0.65
LDLR-205ENST00000557933 TMEM229BQ8NBD8 167 aa11□□□□□ -0.65
LDLR-205ENST00000557933 PTPMT1Q8WUK0 201 aaPredicted RBP11□□□□□ -0.65
LDLR-205ENST00000557933 PIK3IP1Q96FE7 263 aa11□□□□□ -0.65
LDLR-205ENST00000557933 FAM71F1Q96KD3 344 aaPredicted RBP11□□□□□ -0.65
LDLR-205ENST00000557933 OR10C1Q96KK4 312 aa11□□□□□ -0.65
LDLR-205ENST00000557933 GPX7Q96SL4 187 aaPredicted RBP11□□□□□ -0.65
LDLR-205ENST00000557933 SLC25A21Q9BQT8 299 aaPredicted RBP11□□□□□ -0.65
LDLR-205ENST00000557933 TBL1XR1Q9BZK7 514 aa11□□□□□ -0.65
LDLR-205ENST00000557933 PIGMQ9H3S5 423 aa11□□□□□ -0.65
LDLR-205ENST00000557933 C1orf198Q9H425 327 aa11□□□□□ -0.65
LDLR-205ENST00000557933 METTL8Q9H825 291 aaKnown RBP11□□□□□ -0.65
LDLR-205ENST00000557933 OR52A1Q9UKL2 312 aa11□□□□□ -0.65
LDLR-205ENST00000557933 TRAV20A0A0B4J274 112 aa11□□□□□ -0.65
LDLR-205ENST00000557933 A0A1W2PPE3 182 aa11□□□□□ -0.65
LDLR-205ENST00000557933 MEX3AA1L020 520 aaKnown RBP11□□□□□ -0.65
LDLR-205ENST00000557933 EFSO43281 561 aa11□□□□□ -0.65
LDLR-205ENST00000557933 EIF3GO75821 320 aaKnown RBP eCLIP11□□□□□ -0.65
LDLR-205ENST00000557933 SCGB1D2O95969 90 aa11□□□□□ -0.65
LDLR-205ENST00000557933 CD8AP01732 235 aa11□□□□□ -0.65
LDLR-205ENST00000557933 CLPSP04118 112 aa11□□□□□ -0.65
LDLR-205ENST00000557933 VSIG8P0DPA2 414 aa11□□□□□ -0.65
LDLR-205ENST00000557933 PNMTP11086 282 aa11□□□□□ -0.65
LDLR-205ENST00000557933 PSMB6P28072 239 aa11□□□□□ -0.65
LDLR-205ENST00000557933 IL12BP29460 328 aa11□□□□□ -0.65
LDLR-205ENST00000557933 FHITP49789 147 aa11□□□□□ -0.65
LDLR-205ENST00000557933 ASCL1P50553 236 aa11□□□□□ -0.65
LDLR-205ENST00000557933 MPPED2Q15777 294 aa11□□□□□ -0.65
LDLR-205ENST00000557933 SGCAQ16586 387 aa11□□□□□ -0.65
LDLR-205ENST00000557933 ZNF528Q3MIS6 628 aa11□□□□□ -0.65
LDLR-205ENST00000557933 RPL7L1Q6DKI1 246 aaKnown RBP11□□□□□ -0.65
LDLR-205ENST00000557933 OR2A2Q6IF42 318 aa11□□□□□ -0.65
LDLR-205ENST00000557933 FAM166AQ6J272 317 aa11□□□□□ -0.65
LDLR-205ENST00000557933 ANGPTL5Q86XS5 388 aa11□□□□□ -0.65
LDLR-205ENST00000557933 C15orf40Q8WUR7 153 aa11□□□□□ -0.65
LDLR-205ENST00000557933 C8orf44Q96CB5 159 aa11□□□□□ -0.65
LDLR-205ENST00000557933 LAT2Q9GZY6 243 aa11□□□□□ -0.65
LDLR-205ENST00000557933 CHRDQ9H2X0 955 aa11□□□□□ -0.65
LDLR-205ENST00000557933 SCPEP1Q9HB40 452 aa11□□□□□ -0.65
LDLR-205ENST00000557933 SLC2A4RGQ9NR83 387 aa11□□□□□ -0.65
LDLR-205ENST00000557933 POLE3Q9NRF9 147 aa11□□□□□ -0.65
LDLR-205ENST00000557933 HHLA2Q9UM44 414 aa11□□□□□ -0.65
LDLR-205ENST00000557933 TMEM14AQ9Y6G1 99 aa11□□□□□ -0.65
LDLR-205ENST00000557933 SHANK1Q9Y566 2161 aa11□□□□□ -0.65
LDLR-205ENST00000557933 TCRBV21S2A2A0A5A6 115 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 C5orf63A6NC05 138 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 CRHP06850 196 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 GLRA1P23415 457 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 PTGFRP43088 359 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 TNFRSF4P43489 277 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 RAB32Q13637 225 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 SWI5Q1ZZU3 235 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 PRTGQ2VWP7 1150 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 RAB11FIP2Q7L804 512 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 BAP18Q8IXM2 172 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 SPAG16Q8N0X2 631 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 BATF2Q8N1L9 274 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 OR51E1Q8TCB6 317 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 C14orf79Q96F83 325 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 AKR1E2Q96JD6 320 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 RNF126Q9BV68 326 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 VSX1Q9NZR4 365 aaPredicted RBP10.99□□□□□ -0.65
LDLR-205ENST00000557933 CTSFQ9UBX1 484 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 CYP8B1Q9UNU6 501 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 IGHV5-51A0A0C4DH38 117 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 A0A1B0GW55 424 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 FAM221BA6H8Z2 402 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 MED6O75586 246 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 C1QL1O75973 258 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 DUX4L2P0CJ85 424 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 DUX4L3P0CJ86 424 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 DUX4L4P0CJ87 422 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 DUX4L5P0CJ88 424 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 DUX4L6P0CJ89 424 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 DUX4L7P0CJ90 424 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 ZNF823P16415 610 aa10.99□□□□□ -0.65
LDLR-205ENST00000557933 LPAR6P43657 344 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms