RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	SPHAR	Q15513	63 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	TBCE	Q15813	527 aa	Predicted RBP	10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	TIGD6	Q17RP2	521 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	GFOD2	Q3B7J2	385 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	VHLL	Q6RSH7	139 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF704	Q6ZNC4	412 aa	Predicted RBP	10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	TMEM200A	Q86VY9	491 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	KLB	Q86Z14	1044 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF101	Q8IZC7	436 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	NANOGP1	Q8N7R0	232 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	KBTBD8	Q8NFY9	601 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	TSPAN14	Q8NG11	270 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	GATAD2B	Q8WXI9	593 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	FCGR1B	Q92637	280 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	PELI1	Q96FA3	418 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF696	Q9H7X3	374 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	FAM206A	Q9NX38	181 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	BABAM2	Q9NXR7	383 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF391	Q9UJN7	358 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	USP9X	Q93008	2570 aa	Predicted RBP	10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	PCNX1	Q96RV3	2341 aa		10.81	□□□□□ -0.68
ABCD4-223	ENST00000555904	ADGRG4	Q8IZF6	3080 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904		A0A087WXM4	84 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	XRCC2	O43543	280 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	ATE1	O95260	518 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	RPSA	P08865	295 aa	Known RBP	10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	ADRA2A	P08913	450 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	HSMCR30	P0CW71	290 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	GCH1	P30793	250 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	PSMB10	P40306	273 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	CDH15	P55291	814 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	HGFAC	Q04756	655 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	MFGE8	Q08431	387 aa	Predicted RBP	10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	RSPO1	Q2MKA7	263 aa	Predicted RBP	10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	CCDC58	Q4VC31	144 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	RGS7BP	Q6MZT1	257 aa	Predicted RBP	10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	RFPL4B	Q6ZWI9	263 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF367	Q7RTV3	350 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	MRPL21	Q7Z2W9	205 aa	Known RBP	10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	AKAP1	Q92667	903 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	RORB	Q92753	470 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	HS3ST6	Q96QI5	342 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	SIGLEC11	Q96RL6	698 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF649	Q9BS31	505 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	PBOV1	Q9GZY1	135 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	COMMD4	Q9H0A8	199 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	RGCC	Q9H4X1	137 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	OPA3	Q9H6K4	179 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	CA10	Q9NS85	328 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	FAIM	Q9NVQ4	179 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	NUFIP1	Q9UHK0	495 aa	Known RBP	10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	OR52A1	Q9UKL2	312 aa		10.8	□□□□□ -0.68
ABCD4-223	ENST00000555904	CACNA1C	Q13936	2221 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	TRBV2	A0A0J9YWF9	115 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	SHISA9	B4DS77	424 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904		H3BSA7	217 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	SIAH2	O43255	324 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	NGF	P01138	241 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	UBC	P0CG48	685 aa	Known RBP	10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	GLRX	P35754	106 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	TGM4	P49221	684 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	BDH1	Q02338	343 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	IRF3	Q14653	427 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	SNAI3	Q3KNW1	292 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF718	Q3SXZ3	478 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF672	Q499Z4	452 aa	Predicted RBP	10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	SPATA46	Q5T0L3	261 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	RPL22L1	Q6P5R6	122 aa	Known RBP	10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	COLCA1	Q6ZS62	124 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	PGAP1	Q75T13	922 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	NAA40	Q86UY6	237 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	CATSPERD	Q86XM0	798 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	SPART	Q8N0X7	666 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF676	Q8N7Q3	588 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	OR8B12	Q8NGG6	310 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	OR2G2	Q8NGZ5	317 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	REEP6	Q96HR9	211 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	TMEM204	Q9BSN7	226 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	CLEC4M	Q9H2X3	399 aa	Predicted RBP	10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	ZNF442	Q9H7R0	627 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	ACOT13	Q9NPJ3	140 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	PTTG3P	Q9NZH4	202 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	CMAHP	Q9Y471	501 aa		10.79	□□□□□ -0.68
ABCD4-223	ENST00000555904	GCN1	Q92616	2671 aa	Known RBP	10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904		A0A0U1RQV5	110 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904		A0A1B0GVI7	797 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	MAGEA13P	A6NCF6	341 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	TRIM64	A6NGJ6	449 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	TMEM212	A6NML5	194 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	GPRIN2	O60269	458 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	SRSF10	O75494	262 aa	Known RBP	10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	MTRF1	O75570	445 aa	Known RBP	10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	CTAG2	O75638	210 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	PNP	P00491	289 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	ATP6V1B1	P15313	513 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	SELE	P16581	610 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	COL8A1	P27658	744 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	SSTR2	P30874	369 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	MAP2K4	P45985	399 aa		10.78	□□□□□ -0.68
ABCD4-223	ENST00000555904	CCR9	P51686	369 aa		10.78	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms