RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 ZNF30P17039 623 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 IMPDH1P20839 514 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 MMP11P24347 488 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 LAP3P28838 519 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 FGF9P31371 208 aaPredicted RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 LEPP41159 167 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 NSG1P42857 185 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 DAP3P51398 398 aaKnown RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 KPNA2P52292 529 aaKnown RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 NUP107P57740 925 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 EGFEM1PQ0D2K5 195 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 CUL2Q13617 745 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 ARL6IP1Q15041 203 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 LRRC23Q53EV4 343 aaPredicted RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 PYCR3Q53H96 274 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 HSP90AA4PQ58FG1 418 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 C1orf220Q5T0J3 134 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 ACOT7LQ6ZUV0 252 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 CCDC80Q76M96 950 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 ARCQ7LC44 396 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 KRTAP11-1Q8IUC1 163 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 TMEM123Q8N131 208 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 TMEM252Q8N6L7 170 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 C3orf56Q8N813 242 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 FBXL13Q8NEE6 735 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 STEAP2Q8NFT2 490 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 OR4E2Q8NGC2 313 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 OR56B4Q8NH76 319 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 LINC01006Q8NI28 216 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 PIGCQ92535 297 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 RAPGEF5Q92565 580 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 EMG1Q92979 244 aaKnown RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 CAPZA3Q96KX2 299 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 PGLYRP4Q96LB8 373 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 GAL3ST1Q99999 423 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 ZNF670Q9BS34 389 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 RIOK2Q9BVS4 552 aaKnown RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 ZYG11BQ9C0D3 744 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 DEFB127Q9H1M4 99 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 GORASP2Q9H8Y8 452 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 FANCEQ9HB96 536 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 PDFQ9HBH1 243 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 FAM60AQ9NP50 221 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 RAB18Q9NP72 206 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 GPATCH2LQ9NWQ4 482 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 RAB20Q9NX57 234 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 CD274Q9NZQ7 290 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 ADAM22Q9P0K1 906 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 PIPOXQ9P0Z9 390 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 GNPTGQ9UJJ9 305 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 TMCC3Q9ULS5 477 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 TRAV17A0A0B4J275 112 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 C1orf232A0A0U1RR37 186 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 POLR2DO15514 142 aaKnown RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 CXCL13O43927 109 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 SNNO75324 88 aaPredicted RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 ZMPSTE24O75844 475 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 SCGNO76038 276 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 IGHG4P01861 327 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 DUX4L4P0CJ87 422 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 HSMCR30P0CW71 290 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 MAGP20916 626 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 GABRR1P24046 479 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 GCAP28676 217 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 RORAP35398 523 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 LONP1P36776 959 aaKnown RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 HNMTP50135 292 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 GBX2P52951 348 aaPredicted RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 ARFIP1P53367 373 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 BIDP55957 195 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 ATP5J2P56134 94 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 ORC2Q13416 577 aaPredicted RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 PTPN20Q4JDL3 420 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 OTPQ5XKR4 325 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 IGFL3Q6UXB1 125 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 UNQ9370/PRO34162Q6UXP9 181 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 STRADAQ7RTN6 431 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 FAM220AQ7Z4H9 259 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 SETD3Q86TU7 594 aaPredicted RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 NT5DC3Q86UY8 548 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 OOSP2Q86WS3 158 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 VRK2Q86Y07 508 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 ERI1Q8IV48 349 aaKnown RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 VSTM4Q8IW00 320 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 OR11G2Q8NGC1 345 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 OR52M1Q8NGK5 317 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 OR2Y1Q8NGV0 311 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 SLC22A8Q8TCC7 542 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 MAIP1Q8WWC4 291 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 C22orf15Q8WYQ4 148 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 RBMXL1Q96E39 390 aaKnown RBP1.06□□□□□ -2.24
PRPF39-208ENST00000554785 PIK3IP1Q96FE7 263 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 ZIM3Q96PE6 472 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 KLHDC3Q9BQ90 382 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 EBF4Q9BQW3 602 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 CRACR2AQ9BSW2 395 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 BEX2Q9BXY8 128 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 MAGT1Q9H0U3 335 aa1.06□□□□□ -2.24
PRPF39-208ENST00000554785 EXO5Q9H790 373 aa1.06□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms