RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 CHCHD3Q9NX63 227 aaKnown RBP10.54□□□□□ -0.72
SHMT2-209ENST00000553949 ERVK-18Q9QC07 812 aa10.54□□□□□ -0.72
SHMT2-209ENST00000553949 CLEC2DQ9UHP7 191 aa10.54□□□□□ -0.72
SHMT2-209ENST00000553949 N6AMT1Q9Y5N5 214 aa10.54□□□□□ -0.72
SHMT2-209ENST00000553949 R4GMQ9 66 aa10.54□□□□□ -0.72
SHMT2-209ENST00000553949 PTPN13Q12923 2485 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 C5orf63A6NC05 138 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 J3QLW9 94 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 SRSF10O75494 262 aaKnown RBP10.53□□□□□ -0.72
SHMT2-209ENST00000553949 RPP14O95059 124 aaKnown RBP10.53□□□□□ -0.72
SHMT2-209ENST00000553949 PRF1P14222 555 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 ZNF19P17023 458 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 TUBG1P23258 451 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 ANOS1P23352 680 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 MMP16P51512 607 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 MFGE8Q08431 387 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-209ENST00000553949 ADIPOQQ15848 244 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 SPATA46Q5T0L3 261 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 RNLSQ5VYX0 342 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 RGS7BPQ6MZT1 257 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-209ENST00000553949 ZNF544Q6NX49 715 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 TMPRSS11AQ6ZMR5 421 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 FAM57BQ71RH2 274 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 EGFL6Q8IUX8 553 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 OR5L1Q8NGL2 311 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 SLC25A40Q8TBP6 338 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 RORBQ92753 470 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 FBXW5Q969U6 566 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 COG8Q96MW5 612 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 YTHDF1Q9BYJ9 559 aaKnown RBP10.53□□□□□ -0.72
SHMT2-209ENST00000553949 OR2J1Q9GZK6 312 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 POFUT1Q9H488 388 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 SP140LQ9H930 580 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 ISG20L2Q9H9L3 353 aaKnown RBP10.53□□□□□ -0.72
SHMT2-209ENST00000553949 UBTD1Q9HAC8 227 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 TUBG2Q9NRH3 451 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 FZR1Q9UM11 496 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 LRCH1Q9Y2L9 728 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 STARD10Q9Y365 291 aa10.53□□□□□ -0.72
SHMT2-209ENST00000553949 CAB39Q9Y376 341 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-209ENST00000553949 CADP27708 2225 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 TMEM129A0AVI4 362 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 ACOD1A6NK06 481 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 VSTM5A8MXK1 200 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 LOC110117498-PIK3R3F6TDL0 507 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 RGS10O43665 173 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 PNPP00491 289 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 MT-ND5P03915 603 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 OR4A8P0C604 315 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 EEF1B2P24534 225 aaKnown RBP10.52□□□□□ -0.73
SHMT2-209ENST00000553949 APOBEC3AP31941 199 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-209ENST00000553949 TTKP33981 857 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 SERPINF1P36955 418 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 PSMB10P40306 273 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 FABP6P51161 128 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 GABARAPL2P60520 117 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 MSMPQ1L6U9 139 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 OR2G6Q5TZ20 316 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 KLHL36Q8N4N3 616 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 ZNF611Q8N823 705 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 OR52H1Q8NGJ2 320 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 OR52N1Q8NH53 320 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 KLF14Q8TD94 323 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-209ENST00000553949 SPRYD4Q8WW59 207 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-209ENST00000553949 RNF166Q96A37 237 aaPredicted RBP10.52□□□□□ -0.73
SHMT2-209ENST00000553949 PELI1Q96FA3 418 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 MARS2Q96GW9 593 aaKnown RBP10.52□□□□□ -0.73
SHMT2-209ENST00000553949 PGAM5Q96HS1 289 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 SIGLEC11Q96RL6 698 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 CDCA4Q9BXL8 241 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 PBOV1Q9GZY1 135 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 OR10A2Q9H208 303 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 G6PC2Q9NQR9 355 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 PTTG3PQ9NZH4 202 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 ZNF319Q9P2F9 582 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 ERGIC3Q9Y282 383 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 CMAHPQ9Y471 501 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 SNX5Q9Y5X3 404 aa10.52□□□□□ -0.73
SHMT2-209ENST00000553949 H3BSA7 217 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 MYL12BO14950 172 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 TBX1O43435 398 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 ATE1O95260 518 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 MT-ND2P03891 347 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 HTR1AP08908 422 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 ZNF250P15622 560 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 GCH1P30793 250 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 KRTAP10-9P60411 292 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 MALLQ13021 153 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 MRPL28Q13084 256 aaKnown RBP10.51□□□□□ -0.73
SHMT2-209ENST00000553949 GK2Q14410 553 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-209ENST00000553949 IRF3Q14653 427 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 HLXQ14774 488 aaPredicted RBP10.51□□□□□ -0.73
SHMT2-209ENST00000553949 TIGD6Q17RP2 521 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 ZNF718Q3SXZ3 478 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 GLYATL3Q5SZD4 288 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 BCL2L15Q5TBC7 163 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 MBNL2Q5VZF2 373 aaKnown RBP10.51□□□□□ -0.73
SHMT2-209ENST00000553949 PRSS48Q7RTY5 328 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 CATSPERDQ86XM0 798 aa10.51□□□□□ -0.73
SHMT2-209ENST00000553949 FBXL14Q8N1E6 418 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms