RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 ALKBH1Q13686 389 aaKnown RBP12.61□□□□□ -0.39
SHMT2-208ENST00000553868 RAB35Q15286 201 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 HIST2H3PS2Q5TEC6 136 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 OR7E24Q6IFN5 339 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 CFAP77Q6ZQR2 320 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 SLC16A12Q6ZSM3 486 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 SEM1Q6ZVN7 128 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 HIST2H3AQ71DI3 136 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 SPATC1Q76KD6 591 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 CCDC36Q8IYA8 594 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 ZFP41Q8N8Y5 198 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 MAP6Q96JE9 813 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 COMMD4Q9H0A8 199 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 HDHD2Q9H0R4 259 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 EXOSC4Q9NPD3 245 aaKnown RBP12.61□□□□□ -0.39
SHMT2-208ENST00000553868 DDX28Q9NUL7 540 aaKnown RBP12.61□□□□□ -0.39
SHMT2-208ENST00000553868 GALNT8Q9NY28 637 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 GSTK1Q9Y2Q3 226 aa12.61□□□□□ -0.39
SHMT2-208ENST00000553868 TMEM212A6NML5 194 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 H3BMQ9 156 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 RER1O15258 196 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 KCNAB3O43448 404 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 SGCEO43556 437 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 TNFSF13O75888 250 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 IL18BPO95998 194 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 CD8BP10966 210 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 HOXB1P14653 301 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-208ENST00000553868 OPRM1P35372 400 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 ARR3P36575 388 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 PSMB10P40306 273 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 GDI2P50395 445 aaKnown RBP12.6□□□□□ -0.39
SHMT2-208ENST00000553868 SLC3A1Q07837 685 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 DOC2BQ14184 412 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 ELFN2Q5R3F8 820 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 TMEM53Q6P2H8 277 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 BEND4Q6ZU67 534 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 ALDH16A1Q8IZ83 802 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 C1orf162Q8NEQ5 155 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-208ENST00000553868 KBTBD8Q8NFY9 601 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 OR1K1Q8NGR3 316 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 RPS4Y2Q8TD47 263 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 FAM222BQ8WU58 562 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 THRSPQ92748 146 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 SPTSSAQ969W0 71 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 C12orf43Q96C57 262 aaKnown RBP12.6□□□□□ -0.39
SHMT2-208ENST00000553868 ATF6BQ99941 703 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 SH3GL3Q99963 347 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 CHCHD6Q9BRQ6 235 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 NAA50Q9GZZ1 169 aaKnown RBP12.6□□□□□ -0.39
SHMT2-208ENST00000553868 PIGMQ9H3S5 423 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 MOB1AQ9H8S9 216 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 PLEK2Q9NYT0 353 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 GRIP1Q9Y3R0 1128 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 R4GMQ9 66 aa12.6□□□□□ -0.39
SHMT2-208ENST00000553868 ARPC4-TTLL3A0A0A6YYG9 625 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 LOC100506127A0A0U1RQW1 187 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 TRDV1A0A1B0GX56 115 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 CIB4A0PJX0 185 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 LOC110117498-PIK3R3F6TDL0 507 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 PHF1O43189 567 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-208ENST00000553868 RGS9O75916 674 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-208ENST00000553868 UBL3O95164 117 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 MMP16P51512 607 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 PSMA6P60900 246 aaKnown RBP12.59□□□□□ -0.39
SHMT2-208ENST00000553868 RPS25P62851 125 aaKnown RBP12.59□□□□□ -0.39
SHMT2-208ENST00000553868 FOXF2Q12947 444 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 DAZAP2Q15038 168 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-208ENST00000553868 P2RY6Q15077 328 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 CTF1Q16619 201 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 C9orf135Q5VTT2 229 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 VWA1Q6PCB0 445 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 CD200R1LQ6Q8B3 271 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 BTLAQ7Z6A9 289 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 SKA3Q8IX90 412 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 OR2G2Q8NGZ5 317 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 OR5AK2Q8NH90 309 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 HTRA1Q92743 480 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 GHSRQ92847 366 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 STARD4Q96DR4 205 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 FBXO17Q96EF6 278 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 C4orf45Q96LM5 186 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 KCNJ15Q99712 375 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 TMED9Q9BVK6 235 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 OR51E2Q9H255 320 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 RNF121Q9H920 327 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 SP140LQ9H930 580 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 ATPIF1Q9UII2 106 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 GTF2A1LQ9UNN4 478 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 SF3B6Q9Y3B4 125 aaKnown RBP12.59□□□□□ -0.39
SHMT2-208ENST00000553868 SIRT4Q9Y6E7 314 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-208ENST00000553868 ALPK2Q86TB3 2170 aa12.59□□□□□ -0.39
SHMT2-208ENST00000553868 TMEM269A0A1B0GVZ9 245 aa12.58□□□□□ -0.4
SHMT2-208ENST00000553868 ACOD1A6NK06 481 aa12.58□□□□□ -0.4
SHMT2-208ENST00000553868 DOK2O60496 412 aa12.58□□□□□ -0.4
SHMT2-208ENST00000553868 ITGA5P08648 1049 aa12.58□□□□□ -0.4
SHMT2-208ENST00000553868 ZNF32P17041 273 aa12.58□□□□□ -0.4
SHMT2-208ENST00000553868 FGF9P31371 208 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-208ENST00000553868 CRYBB2P43320 205 aa12.58□□□□□ -0.4
SHMT2-208ENST00000553868 KRTAP1-1Q07627 177 aa12.58□□□□□ -0.4
SHMT2-208ENST00000553868 CNPY1Q3B7I2 92 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms