RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 APOBEC3DQ96AK3 386 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-211ENST00000552338 C4orf45Q96LM5 186 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 ACOXLQ9NUZ1 547 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 GNG8Q9UK08 70 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 IKZF2Q9UKS7 526 aa8.29□□□□□ -1.08
LIMA1-211ENST00000552338 SIRT4Q9Y6E7 314 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-211ENST00000552338 CHD6Q8TD26 2715 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 IGHV2OR16-5A0A0B4J2B6 119 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 FAM221AA4D161 298 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 DHRS7CA6NNS2 312 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 PSMD9O00233 223 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 CCRL2O00421 344 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 XRCC2O43543 280 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 INMTO95050 263 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 TTRP02766 147 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 DBHP09172 617 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 ATP6V1B1P15313 513 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 PSMA1P25786 263 aaKnown RBP8.28□□□□□ -1.08
LIMA1-211ENST00000552338 CD40P25942 277 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 LOXP28300 417 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-211ENST00000552338 GRNP28799 593 aaKnown RBP8.28□□□□□ -1.08
LIMA1-211ENST00000552338 HSD11B1P28845 292 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 LIPAP38571 399 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 CX3CR1P49238 355 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 GDI2P50395 445 aaKnown RBP8.28□□□□□ -1.08
LIMA1-211ENST00000552338 GTF2A1P52655 376 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-211ENST00000552338 ZNF121P58317 390 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-211ENST00000552338 RPS11P62280 158 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIMA1-211ENST00000552338 TUBA1BP68363 451 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 NKX6-1P78426 367 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-211ENST00000552338 DAZAP2Q15038 168 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-211ENST00000552338 TAF13Q15543 124 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 SSX1Q16384 188 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 ARMCX4Q5H9R4 360 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 WDR38Q5JTN6 314 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 NCMAPQ5T1S8 102 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 TMEM244Q5VVB8 128 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 TMEM154Q6P9G4 183 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 ARL9Q6T311 187 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 TMEM108Q6UXF1 575 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 UNQ6126/PRO20091Q6UXV3 157 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 ZNF704Q6ZNC4 412 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-211ENST00000552338 GDPGP1Q6ZNW5 385 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 TUBA1AQ71U36 451 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 KLBQ86Z14 1044 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 PRSS35Q8N3Z0 413 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 NUP37Q8NFH4 326 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 FAM222BQ8WU58 562 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 PHYHIPQ92561 330 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 C10orf35Q96D05 121 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 YIPF6Q96EC8 236 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 RADILQ96JH8 1075 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 SPOCK3Q9BQ16 436 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 TMEM204Q9BSN7 226 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 REPIN1Q9BWE0 567 aaKnown RBP8.28□□□□□ -1.08
LIMA1-211ENST00000552338 PBOV1Q9GZY1 135 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 OPA3Q9H6K4 179 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 NDUFB11Q9NX14 153 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 ZNF319Q9P2F9 582 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 OR52A1Q9UKL2 312 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 DOPEY1Q5JWR5 2465 aa8.28□□□□□ -1.08
LIMA1-211ENST00000552338 RAI1Q7Z5J4 1906 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-211ENST00000552338 TRBV2A0A0J9YWF9 115 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 TRBV5-5A0A0J9YX44 114 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 A0A1B0GTI1 187 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 A0A1W2PR80 420 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 C5orf49A4QMS7 147 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 DPRXA6NFQ7 191 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 TUBAL3A6NHL2 446 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 F5H5K5 113 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 LOC110117498-PIK3R3F6TDL0 507 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 AGFG2O95081 481 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 ZFPL1O95159 310 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 CELA3BP08861 270 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 UBCP0CG48 685 aaKnown RBP8.27□□□□□ -1.09
LIMA1-211ENST00000552338 ZNF12P17014 697 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 NR4A1P22736 598 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 CFL1P23528 166 aaKnown RBP8.27□□□□□ -1.09
LIMA1-211ENST00000552338 CALCRP30988 508 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 FGF9P31371 208 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-211ENST00000552338 GABRA5P31644 462 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 GLRXP35754 106 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 TGFBR2P37173 567 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 WNT5AP41221 380 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 KIR3DL2P43630 455 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 IDH3GP51553 393 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-211ENST00000552338 PRKXP51817 358 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 UCP2P55851 309 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 MFGE8Q08431 387 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-211ENST00000552338 YIF1BQ5BJH7 314 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 ADAM5Q6NVV9 412 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 FBXW12Q6X9E4 464 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 NAA40Q86UY6 237 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 ANKRD13BQ86YJ7 626 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 ZNF283Q8N7M2 679 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 OR8B12Q8NGG6 310 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 SLC7A6Q92536 515 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 THRSPQ92748 146 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 UFD1Q92890 307 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 BCL7BQ9BQE9 202 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms