RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 LSM4Q9Y4Z0 139 aaKnown RBP5.34□□□□□ -1.55
LIMA1-204ENST00000549064 G3V2L1 256 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 MS4A18H0YCH9 400 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 C3orf84H3BNL1 204 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 AIM2O14862 343 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 SERPINI2O75830 405 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 CD55P08174 381 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 GUSBP08236 651 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 QDPRP09417 244 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 UQCRBP14927 111 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 RPS4Y1P22090 263 aaKnown RBP5.33□□□□□ -1.56
LIMA1-204ENST00000549064 UQCRC2P22695 453 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 CPT2P23786 658 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 CFHR2P36980 270 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 RPL3P39023 403 aaKnown RBP5.33□□□□□ -1.56
LIMA1-204ENST00000549064 WNT5AP41221 380 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 BPIFB3P59826 476 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 KRTAP10-11P60412 298 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 HPCAP84074 193 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 PLP2Q04941 152 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 MS4A18Q3C1V0 323 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF718Q3SXZ3 478 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 C9orf152Q5JTZ5 239 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 KRBOX4Q5JUW0 171 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 WBP2NLQ6ICG8 309 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 OR4F3Q6IEY1 312 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 SLC27A4Q6P1M0 643 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 WDR88Q6ZMY6 472 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF836Q6ZNA1 936 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 NOXA1Q86UR1 476 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 VRK2Q86Y07 508 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 LDLRAD3Q86YD5 345 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 OR8H3Q8N146 312 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 SLC22A24Q8N4F4 322 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 KLHDC1Q8N7A1 406 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 KLF14Q8TD94 323 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-204ENST00000549064 ITLN1Q8WWA0 313 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 TAAR8Q969N4 342 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 LRR1Q96L50 414 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 B9D2Q9BPU9 175 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 RHOXF2Q9BQY4 288 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 DPY30Q9C005 99 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 OR2J1Q9GZK6 312 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 HRH4Q9H3N8 390 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 ATAD3AQ9NVI7 634 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 EMCNQ9ULC0 261 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 TMED5Q9Y3A6 229 aa5.33□□□□□ -1.56
LIMA1-204ENST00000549064 IGHV1-69DA0A0B4J2H0 117 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 LCE6AA0A183 80 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 TMEM114B3SHH9 223 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 TMEM178BH3BS89 294 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 HMGN4O00479 90 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 MGST3O14880 152 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 AZIN1O14977 448 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 FZD7O75084 574 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 PEX11AO75192 247 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 CPSF4O95639 269 aaKnown RBP5.32□□□□□ -1.56
LIMA1-204ENST00000549064 CYB5R3P00387 301 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-204ENST00000549064 IGHV1-69P01742 117 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 SNRPAP09012 282 aaKnown RBP5.32□□□□□ -1.56
LIMA1-204ENST00000549064 NEFHP12036 1026 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 MMP9P14780 707 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 NQO1P15559 274 aaKnown RBP5.32□□□□□ -1.56
LIMA1-204ENST00000549064 TMEM11P17152 192 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 NCF2P19878 526 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-204ENST00000549064 GABRA5P31644 462 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 PHBP35232 272 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 CSNK1A1P48729 337 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 PITPNBP48739 271 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 EFNB2P52799 333 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 COPZ1P61923 177 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 HOXC5Q00444 222 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 CAV1Q03135 178 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 IGSF11Q5DX21 431 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 DMRTC1Q5HYR2 192 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 FAM201AQ5SY85 155 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 CASC10Q5T4H9 136 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 TMEM53Q6P2H8 277 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 LYPD2Q6UXB3 125 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 NHLRC1Q6VVB1 395 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 Q6ZR03 302 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 RFPL4BQ6ZWI9 263 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 PIWIL3Q7Z3Z3 882 aaKnown RBP5.32□□□□□ -1.56
LIMA1-204ENST00000549064 ANKRD46Q86W74 232 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 RIMKLAQ8IXN7 391 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 CLIP4Q8N3C7 705 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 SCCPDHQ8NBX0 429 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 RBM15BQ8NDT2 890 aaKnown RBP5.32□□□□□ -1.56
LIMA1-204ENST00000549064 OR2Z1Q8NG97 314 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 OR4S1Q8NGB4 309 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 OR4K5Q8NGD3 323 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 OR8B3Q8NGG8 313 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 OR4A15Q8NGL6 344 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 OR1J2Q8NGS2 313 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF420Q8TAQ5 688 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-204ENST00000549064 LHX4Q969G2 390 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 PLEKHA8Q96JA3 519 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 OR8B2Q96RD0 313 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 TMEM246Q9BRR3 403 aa5.32□□□□□ -1.56
LIMA1-204ENST00000549064 TRIM15Q9C019 465 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms