RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 COPS3Q9UNS2 423 aa7.42□□□□□ -1.22
VPS29-203ENST00000546588 UGT2A1Q9Y4X1 527 aa7.42□□□□□ -1.22
VPS29-203ENST00000546588 CACNG2Q9Y698 323 aa7.42□□□□□ -1.22
VPS29-203ENST00000546588 CNTRLQ7Z7A1 2325 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 LAMA5O15230 3695 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 IGKV1D-43A0A0B4J1Z2 117 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 NPIPA2E9PIF3 369 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 F5H0A9 414 aaPredicted RBP7.41□□□□□ -1.22
VPS29-203ENST00000546588 NPIPA3F8WFD2 350 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 H7C1C5 153 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 TAF4O00268 1085 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 TFECO14948 347 aaPredicted RBP7.41□□□□□ -1.22
VPS29-203ENST00000546588 OGG1O15527 345 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 CXCL13O43927 109 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 LALBAP00709 142 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 MT-ND5P03915 603 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 AMY1AP04745 511 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 C1QTNF9P0C862 333 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 HSMCR30P0CW71 290 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 PSKH1P11801 424 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 SELLP14151 372 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 PSMA1P25786 263 aaKnown RBP7.41□□□□□ -1.22
VPS29-203ENST00000546588 PSMB9P28065 219 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 LAP3P28838 519 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 GABRA5P31644 462 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 STARP49675 285 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 ENTPD1P49961 510 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 LSM6P62312 80 aaKnown RBP7.41□□□□□ -1.22
VPS29-203ENST00000546588 LCN6P62502 163 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 HIST1H3AP68431 136 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 MRPS34P82930 218 aaKnown RBP7.41□□□□□ -1.22
VPS29-203ENST00000546588 TLE1Q04724 770 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 PMS2P11Q13670 270 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 TRAM1Q15629 374 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 CNPY1Q3B7I2 92 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 HIST2H3PS2Q5TEC6 136 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 OR2G6Q5TZ20 316 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 DMKNQ6E0U4 476 aaPredicted RBP7.41□□□□□ -1.22
VPS29-203ENST00000546588 TMPRSS11AQ6ZMR5 421 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 HIST2H3AQ71DI3 136 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 SHFQ7M4L6 423 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 SSX6Q7RTT6 188 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 KDM8Q8N371 416 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 RFLNBQ8N5W9 214 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 ATP6V1C2Q8NEY4 427 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 ST7LQ8TDW4 575 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 ASB17Q8WXJ9 295 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 NABP1Q96AH0 204 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 C12orf43Q96C57 262 aaKnown RBP7.41□□□□□ -1.22
VPS29-203ENST00000546588 FAM122AQ96E09 287 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 PGLYRP3Q96LB9 341 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 RBP7Q96R05 134 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 ATP6V0BQ99437 205 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 CITED2Q99967 270 aaPredicted RBP7.41□□□□□ -1.22
VPS29-203ENST00000546588 SPXQ9BT56 116 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 TRIM36Q9NQ86 728 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 TMEM140Q9NV12 185 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 BABAM2Q9NXR7 383 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 GLTPQ9NZD2 209 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 CYB5R1Q9UHQ9 305 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 MCTS1Q9ULC4 181 aaKnown RBP7.41□□□□□ -1.22
VPS29-203ENST00000546588 ALPK2Q86TB3 2170 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 ATMQ13315 3056 aa7.41□□□□□ -1.22
VPS29-203ENST00000546588 FREM1Q5H8C1 2179 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 APC2O95996 2303 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 A0A1B0GVG6 124 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 DAPL1A0PJW8 107 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 PGPEP1LA6NFU8 196 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 PRR32B1ATL7 298 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 ZNF670-ZNF695F2Z2N8 137 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 K7EM74 188 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 PRRG2O14669 202 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 SLC25A17O43808 307 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 SELENOFO60613 162 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 SLC16A7O60669 478 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 SS18L1O75177 396 aaPredicted RBP7.4□□□□□ -1.22
VPS29-203ENST00000546588 SRSF10O75494 262 aaKnown RBP7.4□□□□□ -1.22
VPS29-203ENST00000546588 UPK3AO75631 287 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 CRYABP02511 175 aaKnown RBP7.4□□□□□ -1.22
VPS29-203ENST00000546588 CD36P16671 472 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 OTX1P32242 354 aaPredicted RBP7.4□□□□□ -1.22
VPS29-203ENST00000546588 PYCR1P32322 319 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 PTGER4P35408 488 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 UGT2B10P36537 528 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 CD79BP40259 229 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 RFC3P40938 356 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 CRYBB2P43320 205 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 CCR9P51686 369 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 TDGF1P3P51864 188 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 CLDN17P56750 224 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 RPS7P62081 194 aaKnown RBP7.4□□□□□ -1.22
VPS29-203ENST00000546588 RPP30P78346 268 aaKnown RBP7.4□□□□□ -1.22
VPS29-203ENST00000546588 PMP22Q01453 160 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 FMODQ06828 376 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 RASGEF1BQ0VAM2 473 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 AQP6Q13520 282 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 MED22Q15528 200 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 ETFDHQ16134 617 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 LINC00303Q3SY05 128 aa7.4□□□□□ -1.22
VPS29-203ENST00000546588 GPR107Q5VW38 600 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms