RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 MT-ATP6P00846 226 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 IFNA6P05013 189 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 BDKRB2P30411 391 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 SLC51BQ86UW2 128 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 TMEM229BQ8NBD8 167 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 ASB10Q8WXI3 467 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 SLC39A7Q92504 469 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 GPR27Q9NS67 375 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 SHPKQ9UHJ6 478 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 PI4KAP42356 2102 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 IGHV3-15A0A0B4J1V0 119 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 TRBV11-1A0A0K0K1C0 115 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 A0A1W2PR77 199 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 RNF222A6NCQ9 220 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 OR14I1A6ND48 311 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 OR6C65A6NJZ3 312 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 E9PLN8 166 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 EIF4E2O60573 245 aaKnown RBP13.37□□□□□ -0.27
USP28-214ENST00000545540 SRSF3P84103 164 aaKnown RBP13.37□□□□□ -0.27
USP28-214ENST00000545540 JMJD6Q6NYC1 403 aaPredicted RBP13.37□□□□□ -0.27
USP28-214ENST00000545540 H1FNTQ75WM6 255 aaPredicted RBP13.37□□□□□ -0.27
USP28-214ENST00000545540 SLC25A45Q8N413 288 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 OR10G3Q8NGC4 313 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 LRRC46Q96FV0 321 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 GPER1Q99527 375 aa13.37□□□□□ -0.27
USP28-214ENST00000545540 FGF2P09038 288 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 GLI4P10075 376 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 PGAM2P15259 253 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 ZNF260Q3ZCT1 412 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 OR2W3Q7Z3T1 314 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 OR5M8Q8NGP6 311 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 OR1S2Q8NGQ3 325 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 OR5B2Q96R09 309 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 ELL3Q9HB65 397 aaPredicted RBP13.36□□□□□ -0.27
USP28-214ENST00000545540 RABL2AQ9UBK7 228 aaPredicted RBP13.36□□□□□ -0.27
USP28-214ENST00000545540 UPB1Q9UBR1 384 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 RABL2BQ9UNT1 228 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 MMACHCQ9Y4U1 282 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 EML6Q6ZMW3 1958 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 LILRA5A6NI73 299 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 LMO7DNF2Z398 122 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 SRSF10O75494 262 aaKnown RBP13.36□□□□□ -0.27
USP28-214ENST00000545540 PNLIPRP2P54317 469 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 EMP2P54851 167 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 C11orf87Q6NUJ2 197 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 GLIPR1L1Q6UWM5 242 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 ZNF813Q6ZN06 617 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 OR52H1Q8NGJ2 320 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 PAQR8Q8TEZ7 354 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 METTL21EPA6NDL7 271 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 GIMD1P0DJR0 217 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 CD27P26842 260 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 ZNF93P35789 620 aaPredicted RBP13.36□□□□□ -0.27
USP28-214ENST00000545540 MYBPHQ13203 477 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 ZNF273Q14593 569 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 FDX2Q6P4F2 183 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 KLHL24Q6TFL4 600 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 DTX1Q86Y01 620 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 APCDD1LQ8NCL9 501 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 OR6K3Q8NGY3 331 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 CPNE2Q96FN4 548 aaPredicted RBP13.36□□□□□ -0.27
USP28-214ENST00000545540 GSKIPQ9P0R6 139 aa13.36□□□□□ -0.27
USP28-214ENST00000545540 A0A0A6YYD4 124 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 C9orf170A2RU37 121 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 GPR31O00270 319 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 ADAM10O14672 748 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 SSX5O60225 188 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 CELA2AP08217 269 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 HCKP08631 526 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 HSD11B1P28845 292 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 SERPINF1P36955 418 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 AKIRIN2Q53H80 203 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 NUP210LQ5VU65 1888 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 LCN10Q6JVE6 187 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 FAM57BQ71RH2 274 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 BATF2Q8N1L9 274 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 OR1M1Q8NGA1 313 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 KCNK17Q96T54 332 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 SERINC1Q9NRX5 453 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 LOC400499M0QZD8 3231 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 A0A1B0GX78 115 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 OR2J2O76002 312 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 RPA2P15927 270 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 HNRNPKP61978 463 aaKnown RBP eCLIP13.35□□□□□ -0.27
USP28-214ENST00000545540 IKZF1Q13422 519 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 C1QL2Q7Z5L3 287 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 LRRC18Q8N456 261 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 ELP5Q8TE02 316 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 PARP12Q9H0J9 701 aaKnown RBP13.35□□□□□ -0.27
USP28-214ENST00000545540 DISC1C4P0D8 188 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 OR2T1O43869 369 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 CRTAPO75718 401 aaPredicted RBP13.35□□□□□ -0.27
USP28-214ENST00000545540 RAD51DO75771 328 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 MC2RQ01718 297 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 COL13A1Q5TAT6 717 aaPredicted RBP13.35□□□□□ -0.27
USP28-214ENST00000545540 ZNF704Q6ZNC4 412 aaPredicted RBP13.35□□□□□ -0.27
USP28-214ENST00000545540 DCUN1D4Q92564 292 aa13.35□□□□□ -0.27
USP28-214ENST00000545540 CCNL2Q96S94 520 aaPredicted RBP13.35□□□□□ -0.27
USP28-214ENST00000545540 SLC25A21Q9BQT8 299 aaPredicted RBP13.35□□□□□ -0.27
USP28-214ENST00000545540 GPR84Q9NQS5 396 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms