RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 GRHPRQ9UBQ7 328 aa3.87□□□□□ -1.79
LIMS1-214ENST00000542845 NDRG4Q9ULP0 352 aaKnown RBP3.87□□□□□ -1.79
LIMS1-214ENST00000542845 DNAJC15Q9Y5T4 150 aa3.87□□□□□ -1.79
LIMS1-214ENST00000542845 CAPN7Q9Y6W3 813 aa3.87□□□□□ -1.79
LIMS1-214ENST00000542845 IGKV1D-42A0A075B6H8 117 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 IGHV3OR15-7A0A075B7D8 119 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 PRSS51A0A1B0GVH4 220 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 A0A1B0GWA3 101 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 ZNF785A8K8V0 405 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 MCIDASD6RGH6 385 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 H3BSA7 217 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 RNASET2O00584 256 aaKnown RBP3.86□□□□□ -1.79
LIMS1-214ENST00000542845 FBP2O00757 339 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 HDAC3O15379 428 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 FAM20BO75063 409 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 AMY1AP04745 511 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 ANXA2P07355 339 aaKnown RBP3.86□□□□□ -1.79
LIMS1-214ENST00000542845 PGA4P0DJD7 388 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 PGA3P0DJD8 388 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 UMPSP11172 480 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 ETFAP13804 333 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 PTMSP20962 102 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 KITLGP21583 273 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 RPS4Y1P22090 263 aaKnown RBP3.86□□□□□ -1.79
LIMS1-214ENST00000542845 FPR3P25089 353 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 VDAC2P45880 294 aaPredicted RBP3.86□□□□□ -1.79
LIMS1-214ENST00000542845 RAB25P57735 213 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 CTXN1P60606 82 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 RAP2BP61225 183 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 ECH1Q13011 328 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 KCNJ8Q15842 424 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 LRRC75BQ2VPJ9 315 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 C19orf54Q5BKX5 351 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 C6orf136Q5SQH8 315 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 PRAMEF6Q5VXH4 476 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 C5orf46Q6UWT4 87 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 ZYG11AQ6WRX3 759 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 IGFN1Q86VF2 1251 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 TMEM219Q86XT9 240 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 SBSPONQ8IVN8 264 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 RIMKLAQ8IXN7 391 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 CMTM4Q8IZR5 234 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 CLDN22Q8N7P3 220 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 NPEPL1Q8NDH3 523 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 ADPRHL1Q8NDY3 354 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 BEND2Q8NDZ0 799 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 OR8G5Q8NG78 346 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 OR13G1Q8NGZ3 307 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 OR5J2Q8NH18 312 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 H1FXQ92522 213 aaKnown RBP3.86□□□□□ -1.79
LIMS1-214ENST00000542845 PTP4A1Q93096 173 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 TUBGCP3Q96CW5 907 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 HAVCR1Q96D42 359 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 SLC41A3Q96GZ6 507 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 MAELQ96JY0 434 aaKnown RBP3.86□□□□□ -1.79
LIMS1-214ENST00000542845 ZNF582Q96NG8 517 aaPredicted RBP3.86□□□□□ -1.79
LIMS1-214ENST00000542845 EPYCQ99645 322 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 CDCA4Q9BXL8 241 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 OR2H1Q9GZK4 316 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 PRSS22Q9GZN4 317 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 PCDHAC1Q9H158 963 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 WDR76Q9H967 626 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 SIAEQ9HAT2 523 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 MRPL39Q9NYK5 338 aaKnown RBP3.86□□□□□ -1.79
LIMS1-214ENST00000542845 ZMAT5Q9UDW3 170 aaKnown RBP3.86□□□□□ -1.79
LIMS1-214ENST00000542845 LSM4Q9Y4Z0 139 aaKnown RBP3.86□□□□□ -1.79
LIMS1-214ENST00000542845 TIMM10BQ9Y5J6 103 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 TSSC4Q9Y5U2 329 aaPredicted RBP3.86□□□□□ -1.79
LIMS1-214ENST00000542845 KPTNQ9Y664 436 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 SAR1BQ9Y6B6 198 aa3.86□□□□□ -1.79
LIMS1-214ENST00000542845 AQP12BA6NM10 295 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 H0YHG0 523 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 BLOC1S5-TXNDC5H3BN57 136 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 M0QYG6 137 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 MLNRO43193 412 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 SYNGR1O43759 233 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 ECDO95905 644 aaPredicted RBP3.85□□□□□ -1.79
LIMS1-214ENST00000542845 CH25HO95992 272 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 GASTP01350 101 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 IGHG1P01857 330 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 THY1P04216 161 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 HIST1H2ABP04908 130 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 CHRNGP07510 517 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 DUX4L4P0CJ87 422 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 CPA3P15088 417 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 POU1F1P28069 291 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 LAP3P28838 519 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 GUCA1AP43080 201 aaPredicted RBP3.85□□□□□ -1.79
LIMS1-214ENST00000542845 UBE2E1P51965 193 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 NME5P56597 212 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 CLDN8P56748 225 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 NAA20P61599 178 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 MXRA7P84157 204 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 FMODQ06828 376 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 MPPED2Q15777 294 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 PDCD4Q53EL6 469 aaKnown RBP3.85□□□□□ -1.79
LIMS1-214ENST00000542845 INTS11Q5TA45 600 aaKnown RBP3.85□□□□□ -1.79
LIMS1-214ENST00000542845 ANXA8L1Q5VT79 327 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 FAM91A1Q658Y4 838 aa3.85□□□□□ -1.79
LIMS1-214ENST00000542845 ULK3Q6PHR2 472 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms