RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SEH1LQ96EE3 360 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 CST9LQ9H4G1 147 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 CNTD2Q9H8S5 307 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 NAGKQ9UJ70 344 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 MRPS33Q9Y291 106 aaKnown RBP8.5□□□□□ -1.05
CLIP1-214ENST00000540539 RNF115Q9Y4L5 304 aa8.5□□□□□ -1.05
CLIP1-214ENST00000540539 IGHV2-70DA0A0C4DH43 119 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 SLCO2B1O94956 709 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 OR5G3P0C626 314 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 GSTM3P21266 225 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 LMO2P25791 158 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 PYCR1P32322 319 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 ACAA2P42765 397 aaKnown RBP8.49□□□□□ -1.05
CLIP1-214ENST00000540539 MMP16P51512 607 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 TMEM241Q24JQ0 296 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 PRPF38BQ5VTL8 546 aaKnown RBP8.49□□□□□ -1.05
CLIP1-214ENST00000540539 LEG1Q6P5S2 330 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 SLC25A26Q70HW3 274 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 MCEMP1Q8IX19 187 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 KDM8Q8N371 416 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 CLEC1AQ8NC01 280 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 RPUSD4Q96CM3 377 aaKnown RBP8.49□□□□□ -1.05
CLIP1-214ENST00000540539 TMEM19Q96HH6 336 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 PRRT1Q99946 306 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 CDH20Q9HBT6 801 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 SLC17A5Q9NRA2 495 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 PLSCR4Q9NRQ2 329 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 OARD1Q9Y530 152 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 LOC102724200A0A096LPH7 203 aaPredicted RBP8.49□□□□□ -1.05
CLIP1-214ENST00000540539 SERTM1A2A2V5 107 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 XKRY2A2RUG3 117 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 CDHR4A6H8M9 788 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 C5orf51A6NDU8 294 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 M0R296 226 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 XKRYO14609 159 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 GBAP04062 536 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 ZBTB25P24278 435 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 FPR2P25090 351 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 OR10J1P30954 320 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 GLIPR1P48060 266 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 SLC11A1P49279 550 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 ZNF41P51814 821 aaPredicted RBP8.49□□□□□ -1.05
CLIP1-214ENST00000540539 UBE2G2P60604 165 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 RPS11P62280 158 aaKnown RBP eCLIP8.49□□□□□ -1.05
CLIP1-214ENST00000540539 COL10A1Q03692 680 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 MESP2Q0VG99 397 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 ZNF385BQ569K4 471 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 C9orf50Q5SZB4 431 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 NOXO1Q8NFA2 376 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 MFSD8Q8NHS3 518 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 UBTD2Q8WUN7 234 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 AUTS2Q8WXX7 1259 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 TMEM18Q96B42 140 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 ANKRD9Q96BM1 317 aaPredicted RBP8.49□□□□□ -1.05
CLIP1-214ENST00000540539 AQP10Q96PS8 301 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 SLC25A21Q9BQT8 299 aaPredicted RBP8.49□□□□□ -1.05
CLIP1-214ENST00000540539 CNTNAP3Q9BZ76 1288 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 CNIH4Q9P003 139 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 ST6GALNAC2Q9UJ37 374 aa8.49□□□□□ -1.05
CLIP1-214ENST00000540539 TRAV39A0A0B4J263 110 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 C13orf42A0A1B0GVH6 325 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 H0YL77 283 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 CTSVO60911 334 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 CTSBP07858 339 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 FBXO45P0C2W1 286 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 STAG3L3P0CL85 134 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 CD37P11049 281 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 CR2P20023 1033 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 KLK2P20151 261 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 SPOCK1Q08629 439 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 PPP1R1AQ13522 171 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 TDRG1Q3Y452 100 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 FBLN7Q53RD9 439 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 REEP3Q6NUK4 255 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 LYG2Q86SG7 212 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 TTC9BQ8N6N2 239 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 OR9K2Q8NGE7 335 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 OR2D3Q8NGH3 330 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 LYSMD1Q96S90 227 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 FNDC11Q9BVV2 318 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 GPR35Q9HC97 309 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 ZDHHC3Q9NYG2 299 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 OR5AC2Q9NZP5 309 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 INSL6Q9Y581 213 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 PRSS21Q9Y6M0 314 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 KIF26AQ9ULI4 1882 aaPredicted RBP8.48□□□□□ -1.05
CLIP1-214ENST00000540539 LOC100289279A0A1B0GTE1 492 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 OR4C45A6NMZ5 311 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 M0R3H8 397 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 RAB27BO00194 218 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 RNASET2O00584 256 aaKnown RBP8.48□□□□□ -1.05
CLIP1-214ENST00000540539 PIN1P1O15428 100 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 STK16O75716 305 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 FUT3P21217 361 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 CCKARP32238 428 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 GPR4P46093 362 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 RABIFP47224 123 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 RIPPLY3P57055 190 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 GPR18Q14330 331 aa8.48□□□□□ -1.05
CLIP1-214ENST00000540539 P2RY6Q15077 328 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms