RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 RGS10O43665 173 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 TFP02787 698 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 ITGA5P08648 1049 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 RPSAP08865 295 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 OR2T7P0C7T2 308 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 CD79AP11912 226 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 PIPP12273 146 aaPredicted RBP10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 CRHBPP24387 322 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 DCKP27707 260 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 RPS27P42677 84 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 DVL1P1P54792 670 aaPredicted RBP10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 CDH15P55291 814 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 FOXG1P55316 489 aaPredicted RBP10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 HILS1P60008 231 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 LSM6P62312 80 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 SCRN3Q0VDG4 424 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 AQP6Q13520 282 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 TAF13Q15543 124 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 NRN1LQ496H8 165 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 LAIR2Q6ISS4 152 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 SLC18B1Q6NT16 456 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 TMEM53Q6P2H8 277 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 TMEM154Q6P9G4 183 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 TREML4Q6UXN2 200 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 FOXL2NBQ6ZUU3 175 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 DPY19L4Q7Z388 723 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 LINC00346Q8IVM7 164 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 ACBD7Q8N6N7 88 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 C1orf162Q8NEQ5 155 aaPredicted RBP10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 OR52I1Q8NGK6 324 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 OR2T27Q8NH04 317 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 THEM6Q8WUY1 208 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 SH3GL3Q99963 347 aa10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 EXOSC1Q9Y3B2 195 aaKnown RBP10.73□□□□□ -0.69
CLSTN3-208ENST00000538933 MYL12BO14950 172 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 UBL3O95164 117 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 LYNP07948 512 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 CST2P09228 141 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 KCNMB1Q16558 191 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 TBRG1Q3YBR2 411 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 KCTD21Q4G0X4 260 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 FAM27BQ5VT28 67 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 KCTD18Q6PI47 426 aaPredicted RBP10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 USP43Q70EL4 1123 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 FAM220AQ7Z4H9 259 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 DPPA2Q7Z7J5 298 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 TIGD4Q8IY51 512 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 CCDC36Q8IYA8 594 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 SVOPQ8N4V2 548 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF454Q8N9F8 522 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 GJC3Q8NFK1 279 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 OR52N5Q8NH56 324 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 OTOSQ8NHW6 89 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 SNX33Q8WV41 574 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 NABP1Q96AH0 204 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 WACQ9BTA9 647 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF416Q9BWM5 594 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 TTTY10Q9BZA0 68 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 C1orf198Q9H425 327 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 MARCH7Q9H992 704 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 VCX3AQ9NNX9 186 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 MYOZ1Q9NP98 299 aaPredicted RBP10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 INPP5EQ9NRR6 644 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 MRPS18AQ9NVS2 196 aaKnown RBP10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 ASH2LQ9UBL3 628 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 IKZF2Q9UKS7 526 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 DIMT1Q9UNQ2 313 aaKnown RBP10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 ERGIC3Q9Y282 383 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 EXOGQ9Y2C4 368 aaKnown RBP10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 ATP23Q9Y6H3 246 aa10.72□□□□□ -0.69
CLSTN3-208ENST00000538933 A0A1W2PR80 420 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 MAGEA13PA6NCF6 341 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 RGS9O75916 674 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 WNT11O96014 354 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 SCG5P05408 212 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 CDK1P06493 297 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 APEX1P27695 318 aaKnown RBP10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 ARR3P36575 388 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 SLC15A1P46059 708 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 HCCSP53701 268 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 SLC35A2P78381 396 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 PLP2Q04941 152 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 PIGFQ07326 219 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 CARTPTQ16568 116 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 HIKESHIQ53FT3 197 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 TEX30Q5JUR7 227 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 CORO6Q6QEF8 472 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 SHISA2Q6UWI4 295 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 DCXRQ7Z4W1 244 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 KRT77Q7Z794 578 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 SKA3Q8IX90 412 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 ALDH16A1Q8IZ83 802 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 C17orf78Q8N4C9 275 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 KLHL36Q8N4N3 616 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF418Q8TF45 676 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 BCL2L2Q92843 193 aaPredicted RBP10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 FBXO17Q96EF6 278 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 C1QTNF6Q9BXI9 259 aa10.71□□□□□ -0.69
CLSTN3-208ENST00000538933 FGF20Q9NP95 211 aaPredicted RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms