RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 GK2Q14410 553 aaPredicted RBP12.5□□□□□ -0.41
USP28-204ENST00000537642 GINS1Q14691 196 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 GLCCI1Q86VQ1 547 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 ZNF283Q8N7M2 679 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 ATG16L2Q8NAA4 619 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 BHLHE23Q8NDY6 225 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 SPTSSAQ969W0 71 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 TMEM186Q96B77 213 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 ZNF582Q96NG8 517 aaPredicted RBP12.5□□□□□ -0.41
USP28-204ENST00000537642 OR2V2Q96R30 315 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 ZNF556Q9HAH1 456 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 TMEM106BQ9NUM4 274 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 ARHGAP32A7KAX9 2087 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 WNK2Q9Y3S1 2297 aa12.5□□□□□ -0.41
USP28-204ENST00000537642 C5orf63A6NC05 138 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 H0YL77 283 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 MLNRO43193 412 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 ATP5HO75947 161 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 IGHV2-5P01817 119 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 ANXA8P13928 327 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 TNFRSF1AP19438 455 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 RASSF2P50749 326 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 BLVRAP53004 296 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 CDK5Q00535 292 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 SNAI3Q3KNW1 292 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 SHQ1Q6PI26 577 aaKnown RBP12.49□□□□□ -0.41
USP28-204ENST00000537642 OR10AD1Q8NGE0 317 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 OR13G1Q8NGZ3 307 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 OR51F2Q8NH61 342 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 ST7LQ8TDW4 575 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 UTP4Q969X6 686 aaKnown RBP12.49□□□□□ -0.41
USP28-204ENST00000537642 OTULINQ96BN8 352 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 RAB39BQ96DA2 213 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 SLAMF6Q96DU3 332 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 SLC30A2Q9BRI3 323 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 COPS4Q9BT78 406 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 MARCH7Q9H992 704 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 HIF1ANQ9NWT6 349 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 NPTNQ9Y639 398 aa12.49□□□□□ -0.41
USP28-204ENST00000537642 A0A1B0GWJ7 208 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 ISPDA4D126 451 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 SURF4O15260 269 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 GLCEO94923 617 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 IGHV2-70P01814 119 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 SELEP16581 610 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 GSTT1P30711 240 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 SLC6A9P48067 706 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 MALLQ13021 153 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 TMEM236Q5W0B7 351 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 PLBD1Q6P4A8 553 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 DRAM2Q6UX65 266 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 ZNF771Q7L3S4 317 aaPredicted RBP12.48□□□□□ -0.41
USP28-204ENST00000537642 PEG10Q86TG7 708 aaKnown RBP12.48□□□□□ -0.41
USP28-204ENST00000537642 ERI1Q8IV48 349 aaKnown RBP12.48□□□□□ -0.41
USP28-204ENST00000537642 NRBF2Q96F24 287 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 MEGF10Q96KG7 1140 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 SIGLEC11Q96RL6 698 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 INTS14Q96SY0 518 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 KCNJ15Q99712 375 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 GAL3ST1Q99999 423 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 OR51V1Q9H2C8 321 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 CENPMQ9NSP4 180 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 PPP1R3CQ9UQK1 317 aa12.48□□□□□ -0.41
USP28-204ENST00000537642 COL6A5A8TX70 2615 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 ZNF878C9JN71 531 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 PRR23D1E9PI22 279 aaPredicted RBP12.47□□□□□ -0.41
USP28-204ENST00000537642 PLPP2O43688 288 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 HLA-DPB1P04440 258 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 HMGN1P05114 100 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 PRR23D2P0DMB1 279 aaPredicted RBP12.47□□□□□ -0.41
USP28-204ENST00000537642 ANPEPP15144 967 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 PCMT1P22061 227 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 PAICSP22234 425 aaKnown RBP12.47□□□□□ -0.41
USP28-204ENST00000537642 DAPP51397 102 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 PRKXP51817 358 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 ZNF92Q03936 586 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 EIF2B1Q14232 305 aaKnown RBP12.47□□□□□ -0.41
USP28-204ENST00000537642 TAF13Q15543 124 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 FAHD1Q6P587 224 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 PGAP1Q75T13 922 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 SPATC1Q76KD6 591 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 MRPL21Q7Z2W9 205 aaKnown RBP12.47□□□□□ -0.41
USP28-204ENST00000537642 DPY19L4Q7Z388 723 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 TIGD4Q8IY51 512 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 OR6N2Q8NGY6 317 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 OR2AE1Q8NHA4 323 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 ZMYND19Q96E35 227 aaPredicted RBP12.47□□□□□ -0.41
USP28-204ENST00000537642 ABHD6Q9BV23 337 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 MMADHCQ9H3L0 296 aaPredicted RBP12.47□□□□□ -0.41
USP28-204ENST00000537642 SLC25A19Q9HC21 320 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 GCM1Q9NP62 436 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 TMEM100Q9NV29 134 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 MXRA5Q9NR99 2828 aa12.47□□□□□ -0.41
USP28-204ENST00000537642 TRAV20A0A0B4J274 112 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 F5H5P2 479 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 TMEM178BH3BS89 294 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 SBK2P0C263 348 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 SLC2A1P11166 492 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 THBS2P35442 1172 aa12.46□□□□□ -0.41
USP28-204ENST00000537642 SRP9P49458 86 aaKnown RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms