RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 PNRC2Q9NPJ4 139 aaKnown RBP7.06□□□□□ -1.28
USP28-203ENST00000537490 RPRD1BQ9NQG5 326 aaKnown RBP7.06□□□□□ -1.28
USP28-203ENST00000537490 SAMD4AQ9UPU9 718 aaKnown RBP7.06□□□□□ -1.28
USP28-203ENST00000537490 V9GYQ6 96 aa7.06□□□□□ -1.28
USP28-203ENST00000537490 TRAV40A0A0B4J280 105 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 C5orf63A6NC05 138 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 OR6C68A6NDL8 312 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 LRRC30A6NM36 301 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 CLDN34H7C241 214 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 FAM20BO75063 409 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 GADD45GO95257 159 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 FSTL3O95633 263 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 RENP00797 406 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 LCATP04180 440 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 SEMG1P04279 462 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 PPIAL4GP0DN37 164 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 ANOS1P23352 680 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 SLC6A6P31641 620 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 GGT2P36268 569 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 CD200P41217 278 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 GATA4P43694 442 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 MTNR1AP48039 350 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 PITPNBP48739 271 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 RAD23AP54725 363 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 SPIBQ01892 262 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 TRAP1Q12931 704 aaKnown RBP7.05□□□□□ -1.28
USP28-203ENST00000537490 KRT72Q14CN4 511 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 MPPED2Q15777 294 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 CLEC12AQ5QGZ9 265 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 PRAMEF6Q5VXH4 476 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 WDR25Q64LD2 544 aaPredicted RBP7.05□□□□□ -1.28
USP28-203ENST00000537490 ZNF841Q6ZN19 808 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 ZBTB46Q86UZ6 589 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 C1orf87Q8N0U7 546 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 FITM2Q8N6M3 262 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 SDR9C7Q8NEX9 313 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 OR8B3Q8NGG8 313 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 FANK1Q8TC84 345 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 Q8TCH9 128 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 ZNRF4Q8WWF5 429 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 SLC25A28Q96A46 364 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 PYURFQ96I23 114 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 PLEKHA8Q96JA3 519 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 MAP6Q96JE9 813 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 OR8B2Q96RD0 313 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 ELAC2Q9BQ52 826 aaKnown RBP7.05□□□□□ -1.28
USP28-203ENST00000537490 NUDT16L1Q9BRJ7 211 aaKnown RBP7.05□□□□□ -1.28
USP28-203ENST00000537490 IFT27Q9BW83 186 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 CDADC1Q9BWV3 514 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 GORASP2Q9H8Y8 452 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 KRCC1Q9NPI7 259 aaPredicted RBP7.05□□□□□ -1.28
USP28-203ENST00000537490 UFSP2Q9NUQ7 469 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 MRPL22Q9NWU5 206 aaKnown RBP7.05□□□□□ -1.28
USP28-203ENST00000537490 ADA2Q9NZK5 511 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 CYB5R1Q9UHQ9 305 aa7.05□□□□□ -1.28
USP28-203ENST00000537490 POM121CA8CG34 1229 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 C22orf46C9J442 243 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 HOXA3O43365 443 aaPredicted RBP7.04□□□□□ -1.28
USP28-203ENST00000537490 OR10H3O60404 316 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 HLA-DQA2P01906 255 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 IRF2P14316 349 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 MDKP21741 143 aaPredicted RBP7.04□□□□□ -1.28
USP28-203ENST00000537490 OMGP23515 440 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 PYCR1P32322 319 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 MSX2P35548 267 aaPredicted RBP7.04□□□□□ -1.28
USP28-203ENST00000537490 PSMB10P40306 273 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 RPS27P42677 84 aaKnown RBP7.04□□□□□ -1.28
USP28-203ENST00000537490 GSSP48637 474 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 SMIM11AP58511 58 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 FGF12P61328 243 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 IL13RA1P78552 427 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 ECH1Q13011 328 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 DEFB112Q30KQ8 113 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 SNAI3Q3KNW1 292 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 SLC36A3Q495N2 470 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 SLC35F1Q5T1Q4 408 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 SFRP4Q6FHJ7 346 aaPredicted RBP7.04□□□□□ -1.28
USP28-203ENST00000537490 C16orf87Q6PH81 154 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 BRD3OSQ6XYD6 125 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 DCDC5Q6ZRR9 648 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 PGAP1Q75T13 922 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 NLRC3Q7RTR2 1065 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 CELF2-AS1Q8N7Q2 184 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 OR10S1Q8NGN2 331 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 OR2AJ1Q8NGZ0 328 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 GNPDA2Q8TDQ7 276 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 ERGIC1Q969X5 290 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 CMTM5Q96DZ9 223 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 DDOQ99489 341 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 ATF6BQ99941 703 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 SPAG4Q9NPE6 437 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 CLN8Q9UBY8 286 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 TMCC3Q9ULS5 477 aa7.04□□□□□ -1.28
USP28-203ENST00000537490 TVP23AA6NH52 213 aa7.03□□□□□ -1.28
USP28-203ENST00000537490 CD300LBA8K4G0 201 aa7.03□□□□□ -1.28
USP28-203ENST00000537490 M0R135 149 aa7.03□□□□□ -1.28
USP28-203ENST00000537490 PHYHO14832 338 aa7.03□□□□□ -1.28
USP28-203ENST00000537490 TNFRSF13BO14836 293 aaPredicted RBP7.03□□□□□ -1.28
USP28-203ENST00000537490 IDH3BO43837 385 aa7.03□□□□□ -1.28
USP28-203ENST00000537490 GMNNO75496 209 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms