RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 DHRSXQ8N5I4 330 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 BBS1Q8NFJ9 593 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 OR6N2Q8NGY6 317 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 ST7LQ8TDW4 575 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 UBASH3BQ8TF42 649 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 PIMREGQ9BSJ6 248 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 CYSLTR2Q9NS75 346 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 SMPD3Q9NY59 655 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-208ENST00000532560 NKIRAS2Q9NYR9 191 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 TVP23BQ9NYZ1 205 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 CR1P17927 2039 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 PLSCR5A0PG75 271 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 VWC2LB2RUY7 222 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 ZNF878C9JN71 531 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 M0R135 149 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 PRKYO43930 277 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 ADH4P08319 380 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 RAC2P15153 192 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 KITLGP21583 273 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 GIFP27352 417 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 LIPAP38571 399 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 CAPGP40121 348 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 TPTEP56180 551 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 PSG7Q13046 419 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 KLHL12Q53G59 568 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 ZMAT1Q5H9K5 638 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 C12orf73Q69YU5 71 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 SHFQ7M4L6 423 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 DPY19L4Q7Z388 723 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 GTF3AQ92664 365 aaKnown RBP12.83□□□□□ -0.36
CPSF1-208ENST00000532560 SPTSSAQ969W0 71 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 SLAMF6Q96DU3 332 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 ZMYND19Q96E35 227 aaPredicted RBP12.83□□□□□ -0.36
CPSF1-208ENST00000532560 ZNF799Q96GE5 643 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 COPS4Q9BT78 406 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 GSX1Q9H4S2 264 aaPredicted RBP12.83□□□□□ -0.36
CPSF1-208ENST00000532560 USE1Q9NZ43 259 aa12.83□□□□□ -0.36
CPSF1-208ENST00000532560 ZSCAN5BA6NJL1 495 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 TIMM8AO60220 97 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-208ENST00000532560 HPXP02790 462 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 ALPLP05186 524 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 HEXAP06865 529 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 NR4A2P43354 598 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 MAGEB1P43366 347 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 ZNF81P51508 661 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 LOXL1Q08397 574 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-208ENST00000532560 EIF2B1Q14232 305 aaKnown RBP12.82□□□□□ -0.36
CPSF1-208ENST00000532560 FAM209AQ5JX71 171 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 RNF133Q8WVZ7 376 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 HAVCR1Q96D42 359 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 DIRC2Q96SL1 478 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 SMR3AQ99954 134 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 PURGQ9UJV8 347 aaKnown RBP12.82□□□□□ -0.36
CPSF1-208ENST00000532560 MTORP42345 2549 aa12.82□□□□□ -0.36
CPSF1-208ENST00000532560 CCDC182A6NF36 153 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 EI24O14681 340 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 SELENOFO60613 162 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 IGHV1-46P01743 117 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 ATP6V1B1P15313 513 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 ACHEP22303 614 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 SLC15A1P46059 708 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 ALDH3A2P51648 485 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 RPS7P62081 194 aaKnown RBP12.81□□□□□ -0.36
CPSF1-208ENST00000532560 GRB2P62993 217 aaKnown RBP12.81□□□□□ -0.36
CPSF1-208ENST00000532560 EFNB1P98172 346 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 CARTPTQ16568 116 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 LCN1P1Q5VSP4 162 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 DRAM2Q6UX65 266 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 CLEC9AQ6UXN8 241 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 RHOUQ7L0Q8 258 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 ZNF454Q8N9F8 522 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 MAPK1IP1LQ8NDC0 245 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 ZNF540Q8NDQ6 660 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 OTOSQ8NHW6 89 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 TMEM163Q8TC26 289 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 RDH5Q92781 318 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 CMBLQ96DG6 245 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 KCNJ15Q99712 375 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 ABHD6Q9BV23 337 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 BPESC1Q9GZL8 116 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 TOR3AQ9H497 397 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 RIBC2Q9H4K1 309 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 CHODLQ9H9P2 273 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 CENPMQ9NSP4 180 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 PTTG3PQ9NZH4 202 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 RSL24D1Q9UHA3 163 aaKnown RBP12.81□□□□□ -0.36
CPSF1-208ENST00000532560 ZDHHC8Q9ULC8 765 aa12.81□□□□□ -0.36
CPSF1-208ENST00000532560 M0R129 80 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 DLGAP1O14490 977 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 LY6G6DO95868 133 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 LCATP04180 440 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 USF1P22415 310 aaPredicted RBP12.8□□□□□ -0.36
CPSF1-208ENST00000532560 POLR2IP36954 125 aaKnown RBP12.8□□□□□ -0.36
CPSF1-208ENST00000532560 NAA10P41227 235 aaPredicted RBP12.8□□□□□ -0.36
CPSF1-208ENST00000532560 SLC6A9P48067 706 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 CCL8P80075 99 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 KRTAP1-1Q07627 177 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 RIN1Q13671 783 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 GGTLC2Q14390 218 aa12.8□□□□□ -0.36
CPSF1-208ENST00000532560 HLXQ14774 488 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms