RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 GGTA1PQ4G0N0 100 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 LRRC23Q53EV4 343 aaPredicted RBP2.82□□□□□ -1.96
CD44-235ENST00000532339 C1orf220Q5T0J3 134 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 ZNF57Q68EA5 555 aaPredicted RBP2.82□□□□□ -1.96
CD44-235ENST00000532339 ACSM5Q6NUN0 579 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 C16orf87Q6PH81 154 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 LRRC25Q8N386 305 aaPredicted RBP2.82□□□□□ -1.96
CD44-235ENST00000532339 KIF2BQ8N4N8 673 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 ZSCAN4Q8NAM6 433 aaPredicted RBP2.82□□□□□ -1.96
CD44-235ENST00000532339 CNIH3Q8TBE1 160 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 ADAMTS16Q8TE57 1224 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 C22orf15Q8WYQ4 148 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 EMG1Q92979 244 aaKnown RBP2.82□□□□□ -1.96
CD44-235ENST00000532339 STARD4Q96DR4 205 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 SDSLQ96GA7 329 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 NPY6RQ99463 290 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 SELENOSQ9BQE4 189 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 TM2D1Q9BX74 207 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 UGT1A7Q9HAW7 530 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 RAB18Q9NP72 206 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 ZNHIT6Q9NWK9 470 aaKnown RBP2.82□□□□□ -1.96
CD44-235ENST00000532339 ADAM22Q9P0K1 906 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 PRODH2Q9UF12 536 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 STAP1Q9ULZ2 295 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 CELA1Q9UNI1 258 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 SRRM2Q9UQ35 2752 aaKnown RBP2.82□□□□□ -1.96
CD44-235ENST00000532339 DNAH2Q9P225 4427 aa2.82□□□□□ -1.96
CD44-235ENST00000532339 A0A0J9YYE9 177 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 G3V3Y1 287 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 ARPC3O15145 178 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 LCMT2O60294 686 aaKnown RBP2.81□□□□□ -1.96
CD44-235ENST00000532339 ZNF253O75346 499 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 TRIM3O75382 744 aaPredicted RBP2.81□□□□□ -1.96
CD44-235ENST00000532339 ERLIN1O75477 346 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 KBTBD11O94819 623 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 TRBC1P01850 177 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 CRYBA1P05813 215 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 ANXA5P08758 320 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 CT45A10P0DMU9 189 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 UMPSP11172 480 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 MAGP20916 626 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 ATP5A1P25705 553 aaKnown RBP2.81□□□□□ -1.96
CD44-235ENST00000532339 FOXN2P32314 431 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 SHMT2P34897 504 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 HPCAL1P37235 193 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 SLCO1A2P46721 670 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 GCLMP48507 274 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 DNASE1L1P49184 302 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 SSR4P51571 173 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 ARHGDIBP52566 201 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 RND3P61587 244 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 BDH1Q02338 343 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 RGS1Q08116 209 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 RIPK1Q13546 671 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 CUL2Q13617 745 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 PDK3Q15120 406 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 PPP1R3AQ16821 1122 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 MICAQ29983 383 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 CNPY1Q3B7I2 92 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 SFT2D3Q587I9 215 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 DCST2Q5T1A1 773 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 ARMC12Q5T9G4 340 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 FAM71F2Q6NXP2 309 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 SCYL2Q6P3W7 929 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 LRRC70Q7Z2Q7 622 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 IFNEQ86WN2 208 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 CCDC65Q8IXS2 484 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 MUC15Q8N387 334 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 FGFRL1Q8N441 504 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 TRAM1L1Q8N609 369 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 CLDN19Q8N6F1 224 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 EIF1ADQ8N9N8 165 aaKnown RBP2.81□□□□□ -1.96
CD44-235ENST00000532339 OR5L2Q8NGL0 311 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 TYMSOSQ8TAI1 123 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 TRMT10AQ8TBZ6 339 aaKnown RBP2.81□□□□□ -1.96
CD44-235ENST00000532339 BRSK1Q8TDC3 778 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 PIH1D2Q8WWB5 315 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 NT5C3BQ969T7 300 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 SLC41A3Q96GZ6 507 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 AMDHD1Q96NU7 426 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 TUBGCP2Q9BSJ2 902 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 SPATA16Q9BXB7 569 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 HCAR1Q9BXC0 346 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 DEFB126Q9BYW3 111 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 OPN3Q9H1Y3 402 aaPredicted RBP2.81□□□□□ -1.96
CD44-235ENST00000532339 VCX2Q9H322 139 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 EXOSC3Q9NQT5 275 aaKnown RBP2.81□□□□□ -1.96
CD44-235ENST00000532339 EHFQ9NZC4 300 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 PIPOXQ9P0Z9 390 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 DHRS4-AS1Q9P1J3 65 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 OR12D3Q9UGF7 316 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 SLC2A6Q9UGQ3 507 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 CRLS1Q9UJA2 301 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 RABL2BQ9UNT1 228 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 NEU3Q9UQ49 428 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 WDR45Q9Y484 360 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 IKBKGQ9Y6K9 419 aa2.81□□□□□ -1.96
CD44-235ENST00000532339 SAGE2PA6NJ88 616 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 NPIPA7E9PJI5 369 aa2.8□□□□□ -1.96
CD44-235ENST00000532339 J3QLI3 93 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms