RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 GLYATL2Q8WU03 294 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 ST8SIA1Q92185 356 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 RRNAD1Q96FB5 475 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 SARGQ9BW04 601 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 SLC25A31Q9H0C2 315 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 MOB1AQ9H8S9 216 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 PRMT8Q9NR22 394 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 GDF2Q9UK05 429 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 PRELID3BQ9Y3B1 194 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 CNOT4O95628 575 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 IGKV1D-16P01601 117 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 SERPINE2P07093 398 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 VSIG10L2P0DP72 767 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 ETFDHQ16134 617 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 PHLDA2Q53GA4 152 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 TMEM128Q5BJH2 165 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 DMRTC1Q5HYR2 192 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 SOHLH1Q5JUK2 328 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 THEM4Q5T1C6 240 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 C1QL3Q5VWW1 255 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF709Q8N972 641 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 CCDC54Q8NEL0 328 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 C2orf50Q96LR7 162 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 C20orf24Q9BUV8 137 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 WWTR1Q9GZV5 400 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 CHST6Q9GZX3 395 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 LRFN1Q9P244 771 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 KPTNQ9Y664 436 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 GREB1Q4ZG55 1949 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 A0A1W2PNR3 127 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 C9orf170A2RU37 121 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 SYNGR4O95473 234 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 CELA2BP08218 269 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 GSTP1P09211 210 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 QDPRP09417 244 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 CBR1P16152 277 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 FCGR2CP31995 323 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 ECI1P42126 302 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 CCR5P51681 352 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 GJC3Q8NFK1 279 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 GPBAR1Q8TDU6 330 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 C11orf40Q8WZ69 217 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 SLC25A38Q96DW6 304 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF2Q9BSG1 426 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 TMPRSS13Q9BYE2 586 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 CYB5R1Q9UHQ9 305 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 DTX4Q9Y2E6 619 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 KLHDC2Q9Y2U9 406 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 SCN3AQ9NY46 2000 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 MGAMO43451 1857 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 LINC01565O15544 149 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 JTBO76095 146 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 MPZL1O95297 269 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 NMBP08949 121 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 GLI4P10075 376 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 S100PP25815 95 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 MSX1P28360 303 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 RPL12P30050 165 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 CLINT1Q14677 625 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 ATPAF1Q5TC12 328 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 C1orf53Q5VUE5 145 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 DGAT2L6Q6ZPD8 337 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 Q6ZRG5 221 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 OR4D10Q8NGI6 311 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 EMG1Q92979 244 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 KISS1RQ969F8 398 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 C12orf57Q99622 126 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 SOSTQ9BQB4 213 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 NMNAT2Q9BZQ4 307 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 SLC22A11Q9NSA0 550 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 KLHL13Q9P2N7 655 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 NXT1Q9UKK6 140 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 TMEM184BQ9Y519 407 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF638Q14966 1978 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 PATJQ8NI35 1801 aa7.56□□□□□ -1.2
LIMCH1-216ENST00000512820 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 PIN1P1O15428 100 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 TNFSF12O43508 249 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ALOX12BO75342 701 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 EN2P19622 333 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 POU3F2P20265 443 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 CD27P26842 260 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 HOXC12P31275 282 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 HTR5AP47898 357 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 NKX6-1P78426 367 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 TOMM34Q15785 309 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 OPN5Q6U736 354 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 GVQW1Q8N7I0 195 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 OR9K2Q8NGE7 335 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 OR1S2Q8NGQ3 325 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ST7LQ8TDW4 575 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 MRPL38Q96DV4 380 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 MVB12AQ96EY5 273 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 LRRC61Q9BV99 259 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 FANCFQ9NPI8 374 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 PTRH2Q9Y3E5 179 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 OTOFQ9HC10 1997 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ARID1AO14497 2285 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms