RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 SLC9A3R2Q15599 337 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 MS4A18Q3C1V0 323 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 TMED6Q8WW62 240 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 AQP3Q92482 292 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 FOXRED1Q96CU9 486 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 TMEM41AQ96HV5 264 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF285Q96NJ3 590 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 CDCA3Q99618 268 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 SUSD2Q9UGT4 822 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 A0A1W2PPC4 97 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 TMEM200CA6NKL6 621 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 TTLL8A6PVC2 850 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF217O75362 1048 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 ADAP1O75689 374 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 MPIG6BO95866 241 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 SLC25A4P12235 298 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 PUSL1Q8N0Z8 303 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 OR10H5Q8NGA6 315 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 DAZLQ92904 295 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 OR2T1O43869 369 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 SRSF10O75494 262 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 WDPCPO95876 746 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 TTRP02766 147 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 ABOP16442 354 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 RAB3AP20336 220 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 NPY4RP50391 375 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 EMP2P54851 167 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 SRSF3P84103 164 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 TLE3Q04726 772 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 TOMM20Q15388 145 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 AWAT2Q6E213 333 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 LPCAT3Q6P1A2 487 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 TMEM71Q6P5X7 295 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF813Q6ZN06 617 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 NUP54Q7Z3B4 507 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 BHLHE23Q8NDY6 225 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 TMEM104Q8NE00 496 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 ELP5Q8TE02 316 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 C11orf40Q8WZ69 217 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 FAM117AQ9C073 453 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 MYOZ1Q9NP98 299 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 LHX6Q9UPM6 363 aa8.25□□□□□ -1.09
LIMCH1-215ENST00000512632 TLCD2A6NGC4 264 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF354AO60765 605 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 PSMB6P28072 239 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 RPL35P42766 123 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 FASLGP48023 281 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 COL13A1Q5TAT6 717 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 TMEM200AQ86VY9 491 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 CBLN2Q8IUK8 224 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 ABCA7Q8IZY2 2146 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 OR5AP2Q8NGF4 316 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 ZC3H10Q96K80 434 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 FN3KRPQ9HA64 309 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 POLR1DQ9Y2S0 133 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 MMACHCQ9Y4U1 282 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 IGKV3D-11A0A0A0MRZ8 115 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 ABCD4O14678 606 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 GALNSP34059 522 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 OR1D5P58170 312 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 KLHL24Q6TFL4 600 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 OR1M1Q8NGA1 313 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 OR4K15Q8NH41 348 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 OR51E1Q8TCB6 317 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 SLAMF6Q96DU3 332 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 HPF1Q9NWY4 346 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 TMEM218A2RU14 115 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 OR6C76A6NM76 312 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 MPTX1A8MV57 137 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 SOCS1O15524 211 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 ATG12O94817 140 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 ACTL6AO96019 429 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 BIDP55957 195 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 FBXW4P57775 412 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF345Q14585 488 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 FOXRED2Q8IWF2 684 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 OR4K17Q8NGC6 315 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 OR1L3Q8NH93 324 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 ASB13Q8WXK3 278 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 SLC6A15Q9H2J7 730 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 PIGMQ9H3S5 423 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF304Q9HCX3 659 aa8.24□□□□□ -1.09
LIMCH1-215ENST00000512632 A0A0A6YYH2 397 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 A6NJ64 397 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 RHPN2P1A8MT19 583 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 SSX5O60225 188 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 BCKDHBP21953 392 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 AIMP2Q13155 320 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 PLEKHN1Q494U1 663 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 LYPD6Q86Y78 171 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 RRNAD1Q96FB5 475 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 FAM71F1Q96KD3 344 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 VN1R1Q9GZP7 353 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 PBOV1Q9GZY1 135 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 TREM1Q9NP99 234 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 SPAG17Q6Q759 2223 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 FTCDNL1E5RQL4 147 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 F8W036 122 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 H0YIZ8 118 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 H7C2Y5 167 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms