RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 GK2Q14410 553 aaPredicted RBP18.42■□□□□ 0.54
HDDC3-203ENST00000494993 KRT72Q14CN4 511 aa18.42■□□□□ 0.54
HDDC3-203ENST00000494993 RFX4Q33E94 735 aa18.42■□□□□ 0.54
HDDC3-203ENST00000494993 SLC36A3Q495N2 470 aa18.42■□□□□ 0.54
HDDC3-203ENST00000494993 CELF2-AS1Q8N7Q2 184 aa18.42■□□□□ 0.54
HDDC3-203ENST00000494993 TAF15Q92804 592 aaKnown RBP eCLIP18.42■□□□□ 0.54
HDDC3-203ENST00000494993 ERGIC1Q969X5 290 aa18.42■□□□□ 0.54
HDDC3-203ENST00000494993 PITX2Q99697 317 aa18.42■□□□□ 0.54
HDDC3-203ENST00000494993 ATF6BQ99941 703 aa18.42■□□□□ 0.54
HDDC3-203ENST00000494993 OR52D1Q9H346 318 aa18.42■□□□□ 0.54
HDDC3-203ENST00000494993 CLN8Q9UBY8 286 aa18.42■□□□□ 0.54
HDDC3-203ENST00000494993 MDFIC2A0A1B0GVS7 189 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 F5H5K5 113 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 PHYHO14832 338 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 HIST1H1CP16403 213 aaKnown RBP18.41■□□□□ 0.54
HDDC3-203ENST00000494993 SLC6A6P31641 620 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 CD200P41217 278 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 ECH1Q13011 328 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 WDR25Q64LD2 544 aaPredicted RBP18.41■□□□□ 0.54
HDDC3-203ENST00000494993 C16orf87Q6PH81 154 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 LYPD2Q6UXB3 125 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 DCDC5Q6ZRR9 648 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 ZBTB46Q86UZ6 589 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 FITM2Q8N6M3 262 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 OR4K13Q8NH42 304 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 Q8TCH9 128 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 SLITRK2Q9H156 845 aa18.41■□□□□ 0.54
HDDC3-203ENST00000494993 RPRD1BQ9NQG5 326 aaKnown RBP18.41■□□□□ 0.54
HDDC3-203ENST00000494993 CMYA5Q8N3K9 4069 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 FAM20BO75063 409 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 RAD23AP54725 363 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 TRAP1Q12931 704 aaKnown RBP18.4■□□□□ 0.54
HDDC3-203ENST00000494993 MALLQ13021 153 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 CLEC12AQ5QGZ9 265 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 ZNF841Q6ZN19 808 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 NAA40Q86UY6 237 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 OR10S1Q8NGN2 331 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 OR11L1Q8NGX0 322 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 OR2AJ1Q8NGZ0 328 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 IFT27Q9BW83 186 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 CDADC1Q9BWV3 514 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 PNRC2Q9NPJ4 139 aaKnown RBP18.4■□□□□ 0.54
HDDC3-203ENST00000494993 CYB5R1Q9UHQ9 305 aa18.4■□□□□ 0.54
HDDC3-203ENST00000494993 GADD45GO95257 159 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 LCATP04180 440 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 MDKP21741 143 aaPredicted RBP18.39■□□□□ 0.53
HDDC3-203ENST00000494993 GGT2P36268 569 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 SMIM11AP58511 58 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 FGF12P61328 243 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 SPIBQ01892 262 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 DEFB112Q30KQ8 113 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 PRAMEF6Q5VXH4 476 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 TREML4Q6UXN2 200 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 BRD3OSQ6XYD6 125 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 PGAP1Q75T13 922 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 SPATC1Q76KD6 591 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 C19orf18Q8NEA5 215 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 SLCO4A1Q96BD0 722 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 TMIGD2Q96BF3 282 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 FN3KQ9H479 309 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 PRDM13Q9H4Q3 707 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 SPAG4Q9NPE6 437 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 UFSP2Q9NUQ7 469 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 V9GYQ6 96 aa18.39■□□□□ 0.53
HDDC3-203ENST00000494993 C22orf46C9J442 243 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 HOXA3O43365 443 aaPredicted RBP18.38■□□□□ 0.53
HDDC3-203ENST00000494993 GMNNO75496 209 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 HLA-DQA2P01906 255 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 SEMG1P04279 462 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 NOS3P29474 1203 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 PSMB10P40306 273 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 MPPED2Q15777 294 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 GPR157Q5UAW9 335 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 SDR9C7Q8NEX9 313 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 SPRYD4Q8WW59 207 aaPredicted RBP18.38■□□□□ 0.53
HDDC3-203ENST00000494993 CMTM5Q96DZ9 223 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 GORASP2Q9H8Y8 452 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 ADA2Q9NZK5 511 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 TMCC3Q9ULS5 477 aa18.38■□□□□ 0.53
HDDC3-203ENST00000494993 OR6C68A6NDL8 312 aa18.37■□□□□ 0.53
HDDC3-203ENST00000494993 ENSAO43768 121 aaKnown RBP18.37■□□□□ 0.53
HDDC3-203ENST00000494993 OMGP23515 440 aa18.37■□□□□ 0.53
HDDC3-203ENST00000494993 TPTEP56180 551 aa18.37■□□□□ 0.53
HDDC3-203ENST00000494993 OR8G1Q15617 311 aa18.37■□□□□ 0.53
HDDC3-203ENST00000494993 MRPL21Q7Z2W9 205 aaKnown RBP18.37■□□□□ 0.53
HDDC3-203ENST00000494993 RNF148Q8N7C7 305 aa18.37■□□□□ 0.53
HDDC3-203ENST00000494993 ZDHHC16Q969W1 377 aa18.37■□□□□ 0.53
HDDC3-203ENST00000494993 ZNF446Q9NWS9 450 aa18.37■□□□□ 0.53
HDDC3-203ENST00000494993 MRPL22Q9NWU5 206 aaKnown RBP18.37■□□□□ 0.53
HDDC3-203ENST00000494993 NOP16Q9Y3C1 178 aaKnown RBP18.37■□□□□ 0.53
HDDC3-203ENST00000494993 MMP24Q9Y5R2 645 aa18.37■□□□□ 0.53
HDDC3-203ENST00000494993 SRRM5B3KS81 715 aa18.36■□□□□ 0.53
HDDC3-203ENST00000494993 M0R135 149 aa18.36■□□□□ 0.53
HDDC3-203ENST00000494993 IDH3BO43837 385 aa18.36■□□□□ 0.53
HDDC3-203ENST00000494993 OR10H3O60404 316 aa18.36■□□□□ 0.53
HDDC3-203ENST00000494993 CA6P23280 308 aa18.36■□□□□ 0.53
HDDC3-203ENST00000494993 GSSP48637 474 aa18.36■□□□□ 0.53
HDDC3-203ENST00000494993 NPY4RP50391 375 aa18.36■□□□□ 0.53
HDDC3-203ENST00000494993 BPIFB3P59826 476 aa18.36■□□□□ 0.53
HDDC3-203ENST00000494993 HOXA4Q00056 320 aaPredicted RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms