RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 SERPINB5P36952 375 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 RBMXP38159 391 aaKnown RBP4.36□□□□□ -1.71
PTCD3-219ENST00000494323 MAGEB1P43366 347 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 RPL14P50914 215 aaKnown RBP4.36□□□□□ -1.71
PTCD3-219ENST00000494323 SH3BGRP55822 239 aaPredicted RBP4.36□□□□□ -1.71
PTCD3-219ENST00000494323 ABCE1P61221 599 aaKnown RBP4.36□□□□□ -1.71
PTCD3-219ENST00000494323 CCL8P80075 99 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 DEFA6Q01524 100 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 SCARB2Q14108 478 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 HNF4GQ14541 408 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 GSG1Q2KHT4 349 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 SMU1Q2TAY7 513 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 TRMT5Q32P41 509 aaKnown RBP4.36□□□□□ -1.71
PTCD3-219ENST00000494323 GLIPR1L2Q4G1C9 344 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 KRBOX4Q5JUW0 171 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 ACSM5Q6NUN0 579 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 HIST3H2AQ7L7L0 130 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 ZNF440Q8IYI8 595 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 LRRC34Q8IZ02 419 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 RIBC1Q8N443 379 aaPredicted RBP4.36□□□□□ -1.71
PTCD3-219ENST00000494323 TRIML2Q8N7C3 387 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 ZDHHC22Q8N966 263 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 OR51F2Q8NH61 342 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 FGFBP3Q8TAT2 258 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 SCARB1Q8WTV0 552 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 SLC38A5Q8WUX1 472 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 TAF15Q92804 592 aaKnown RBP eCLIP4.36□□□□□ -1.71
PTCD3-219ENST00000494323 VPS33AQ96AX1 596 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 TESCQ96BS2 214 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 ZMYND19Q96E35 227 aaPredicted RBP4.36□□□□□ -1.71
PTCD3-219ENST00000494323 ZNF75AQ96N20 296 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 CCDC115Q96NT0 180 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 ZNF317Q96PQ6 595 aaPredicted RBP4.36□□□□□ -1.71
PTCD3-219ENST00000494323 DUX5Q96PT3 197 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 OR2M2Q96R28 347 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 SLC6A7Q99884 636 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 RSPO3Q9BXY4 272 aaPredicted RBP4.36□□□□□ -1.71
PTCD3-219ENST00000494323 PPIL3Q9H2H8 161 aaKnown RBP4.36□□□□□ -1.71
PTCD3-219ENST00000494323 OR51B6Q9H340 312 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 MAGIXQ9H6Y5 334 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 SEBOXQ9HB31 216 aaPredicted RBP4.36□□□□□ -1.71
PTCD3-219ENST00000494323 ESM1Q9NQ30 184 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 MED29Q9NX70 200 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 OR6C3Q9NZP0 311 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 BTNL2Q9UIR0 455 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 PAM16Q9Y3D7 125 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 PPIAL4AQ9Y536 164 aa4.36□□□□□ -1.71
PTCD3-219ENST00000494323 A0A096LPI6 279 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 A0A1W2PPW3 197 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 E9PBE3 544 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 RFXANKO14593 260 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 TNFRSF13BO14836 293 aaPredicted RBP4.35□□□□□ -1.71
PTCD3-219ENST00000494323 AIM2O14862 343 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 TYROBPO43914 113 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 KRT75O95678 551 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 BCL10O95999 233 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 PNPP00491 289 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 BCHEP06276 602 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 QDPRP09417 244 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 NUDT17P0C025 328 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 ANPEPP15144 967 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 NQO1P15559 274 aaKnown RBP4.35□□□□□ -1.71
PTCD3-219ENST00000494323 ZNF14P17017 642 aaPredicted RBP4.35□□□□□ -1.71
PTCD3-219ENST00000494323 AHCYP23526 432 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 GTF2E2P29084 291 aaKnown RBP4.35□□□□□ -1.71
PTCD3-219ENST00000494323 HOXD3P31249 432 aaPredicted RBP4.35□□□□□ -1.71
PTCD3-219ENST00000494323 SLC1A6P48664 564 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 EVX1P49640 407 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 ERVS71-1P61550 626 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 GALK2Q01415 458 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 IFFO1Q0D2I5 559 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 CAMK2DQ13557 499 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 GTDC1Q4AE62 458 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 LIN52Q52LA3 116 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 IGSF11Q5DX21 431 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 GGNBP1Q5YKI7 109 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 SIGIRRQ6IA17 410 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 RBPMS2Q6ZRY4 209 aaKnown RBP4.35□□□□□ -1.71
PTCD3-219ENST00000494323 USP43Q70EL4 1123 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 SHFQ7M4L6 423 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 SKA3Q8IX90 412 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 CCDC36Q8IYA8 594 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 C20orf196Q8IYI0 205 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 TMEM123Q8N131 208 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 BPIFB2Q8N4F0 458 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 ICA1LQ8NDH6 482 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 OR6N1Q8NGY5 312 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 MGARPQ8TDB4 240 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 MAL2Q969L2 176 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 TMEM19Q96HH6 336 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 GRAMD2BQ96HH9 432 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 TSPAN32Q96QS1 320 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 SORT1Q99523 831 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 RBM4Q9BWF3 364 aaKnown RBP4.35□□□□□ -1.71
PTCD3-219ENST00000494323 WDR55Q9H6Y2 383 aaPredicted RBP4.35□□□□□ -1.71
PTCD3-219ENST00000494323 ZNF665Q9H7R5 613 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 TPT1P8Q9HAU6 139 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 SLC52A3Q9NQ40 469 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 ZNF224Q9NZL3 707 aa4.35□□□□□ -1.71
PTCD3-219ENST00000494323 TAAR3PQ9P1P4 343 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms