RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 NPFFO15130 113 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 CTLA4P16410 223 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 EEF1B2P24534 225 aaKnown RBP11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 HIST1H3AP68431 136 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 HOXA4Q00056 320 aaPredicted RBP11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 EMX1Q04741 257 aaPredicted RBP11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 PIN1Q13526 163 aaPredicted RBP11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 OR8B8Q15620 311 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 HIST2H3PS2Q5TEC6 136 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 FOXB2Q5VYV0 432 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 C1orf122Q6ZSJ8 110 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 HIST2H3AQ71DI3 136 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 DHDDSQ86SQ9 333 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 CALHM3Q86XJ0 350 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 CMTM4Q8IZR5 234 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 C11orf44Q8N8P7 122 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 DTX3Q8N9I9 347 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 OR2T6Q8NHC8 308 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 KAT8Q9H7Z6 458 aaKnown RBP11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 BAG5Q9UL15 447 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 SIGLEC9Q9Y336 463 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 SH3GLB1Q9Y371 365 aa11.67□□□□□ -0.54
PRPF40A-211ENST00000493468 PRSS37A4D1T9 235 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 XKRYO14609 159 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 RER1O15258 196 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 PAHP00439 452 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 IFI30P13284 250 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 MTPNP58546 118 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 SELPLGQ14242 412 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 GK2Q14410 553 aaPredicted RBP11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 KCNMB1Q16558 191 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 KRTAP27-1Q3LI81 207 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 MESTQ5EB52 335 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 FAM90A1Q86YD7 464 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 GLB1L2Q8IW92 636 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 DPP10Q8N608 796 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 OR4F17Q8NGA8 305 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 PPP1R35Q8TAP8 253 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 OR4F4Q96R69 305 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 CGREF1Q99674 301 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 WDR76Q9H967 626 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 GRHPRQ9UBQ7 328 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 MAB21L2Q9Y586 359 aa11.66□□□□□ -0.54
PRPF40A-211ENST00000493468 TRAV27A0A087WT01 109 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 TMEM120BA0PK00 339 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 GMDSO60547 372 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 MPIG6BO95866 241 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 GYPAP02724 150 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 SAA4P35542 130 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 SLC9A3P48764 834 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 SLC18A1P54219 525 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 ACSM1Q08AH1 577 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 OR8G1Q15617 311 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 VMACQ2NL98 169 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 TEX36Q5VZQ5 186 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 PGM2L1Q6PCE3 622 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 FAM122BQ7Z309 247 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 OAFQ86UD1 273 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 NDUFA11Q86Y39 141 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 BEND2Q8NDZ0 799 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 GJC3Q8NFK1 279 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 OR51A7Q8NH64 312 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 ST8SIA4Q92187 359 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 CCDC28BQ9BUN5 200 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 RAB18Q9NP72 206 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 SIRT7Q9NRC8 400 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 ONECUT1Q9UBC0 465 aa11.65□□□□□ -0.54
PRPF40A-211ENST00000493468 H3BUX3 64 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 K7EIL1 84 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 FBXO24O75426 580 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 KHDRBS3O75525 346 aaKnown RBP11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 CD14P08571 375 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 TNFRSF1BP20333 461 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 ST3GAL3Q11203 375 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 AGKQ53H12 422 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 CRIP3Q6Q6R5 217 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 GCSAMQ8N6F7 178 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 BOLLQ8N9W6 283 aaKnown RBP11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 TNFRSF14Q92956 283 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 ITPKCQ96DU7 683 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 Q96M85 177 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 ZNF570Q96NI8 536 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 ADAT1Q9BUB4 502 aaKnown RBP11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 MMP28Q9H239 520 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 CENPHQ9H3R5 247 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 AURKCQ9UQB9 309 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 ADAM18Q9Y3Q7 739 aa11.64□□□□□ -0.55
PRPF40A-211ENST00000493468 LOC100653049A0A140TA62 436 aa11.63□□□□□ -0.55
PRPF40A-211ENST00000493468 MEIOCA2RUB1 952 aa11.63□□□□□ -0.55
PRPF40A-211ENST00000493468 SLC16A7O60669 478 aa11.63□□□□□ -0.55
PRPF40A-211ENST00000493468 KRT34O76011 436 aa11.63□□□□□ -0.55
PRPF40A-211ENST00000493468 LHBP01229 141 aa11.63□□□□□ -0.55
PRPF40A-211ENST00000493468 ACSM4P0C7M7 580 aa11.63□□□□□ -0.55
PRPF40A-211ENST00000493468 GZMMP51124 257 aa11.63□□□□□ -0.55
PRPF40A-211ENST00000493468 UBE2E1P51965 193 aa11.63□□□□□ -0.55
PRPF40A-211ENST00000493468 PRSS12P56730 875 aa11.63□□□□□ -0.55
PRPF40A-211ENST00000493468 PRKCDQ05655 676 aa11.63□□□□□ -0.55
PRPF40A-211ENST00000493468 MALLQ13021 153 aa11.63□□□□□ -0.55
PRPF40A-211ENST00000493468 AANATQ16613 207 aa11.63□□□□□ -0.55
PRPF40A-211ENST00000493468 RSPO1Q2MKA7 263 aaPredicted RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms