RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 ZNF121P58317 390 aaPredicted RBP14.84□□□□□ -0.03
LIME1-208ENST00000493265 GABARAPL2P60520 117 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 MFGE8Q08431 387 aaPredicted RBP14.84□□□□□ -0.03
LIME1-208ENST00000493265 SNTB2Q13425 540 aaKnown RBP14.84□□□□□ -0.03
LIME1-208ENST00000493265 DAZAP2Q15038 168 aaPredicted RBP14.84□□□□□ -0.03
LIME1-208ENST00000493265 GFOD2Q3B7J2 385 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 SPATA46Q5T0L3 261 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 LIPNQ5VXI9 398 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 DEGS2Q6QHC5 323 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 ARL9Q6T311 187 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 ZNF101Q8IZC7 436 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 SPRYD4Q8WW59 207 aaPredicted RBP14.84□□□□□ -0.03
LIME1-208ENST00000493265 GATAD2BQ8WXI9 593 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 DCLRE1CQ96SD1 692 aaKnown RBP14.84□□□□□ -0.03
LIME1-208ENST00000493265 DOK1Q99704 481 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 ZNF649Q9BS31 505 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 JAM3Q9BX67 310 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 ERGIC3Q9Y282 383 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 SPEF1Q9Y4P9 236 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 SNX5Q9Y5X3 404 aa14.84□□□□□ -0.03
LIME1-208ENST00000493265 TMEM269A0A1B0GVZ9 245 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 C5orf63A6NC05 138 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 SULT1C4O75897 302 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 TNFAIP8O95379 198 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 MT-ND5P03915 603 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 HTR1AP08908 422 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 ANOS1P23352 680 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 LOXP28300 417 aaPredicted RBP14.83□□□□□ -0.04
LIME1-208ENST00000493265 PSMA6P60900 246 aaKnown RBP14.83□□□□□ -0.04
LIME1-208ENST00000493265 ERVS71-1P61550 626 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 ZNF829Q3KNS6 432 aaPredicted RBP14.83□□□□□ -0.04
LIME1-208ENST00000493265 KRTAP27-1Q3LI81 207 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 DRAM2Q6UX65 266 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 RFPL4BQ6ZWI9 263 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 RHOUQ7L0Q8 258 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 PRSS48Q7RTY5 328 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 KLBQ86Z14 1044 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 OR1J1Q8NGS3 322 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 PGAM5Q96HS1 289 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 MYCBPQ99417 103 aaPredicted RBP14.83□□□□□ -0.04
LIME1-208ENST00000493265 NIPAL2Q9H841 368 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 PTTG3PQ9NZH4 202 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 FZR1Q9UM11 496 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 STARD10Q9Y365 291 aa14.83□□□□□ -0.04
LIME1-208ENST00000493265 CAB39Q9Y376 341 aaPredicted RBP14.83□□□□□ -0.04
LIME1-208ENST00000493265 SHISA9B4DS77 424 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 LOC110117498-PIK3R3F6TDL0 507 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 GPRIN2O60269 458 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 SMPD2O60906 423 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 PNPP00491 289 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 APOC1P02654 83 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 NR4A1P22736 598 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 OTX1P32242 354 aaPredicted RBP14.82□□□□□ -0.04
LIME1-208ENST00000493265 RAD52P43351 418 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 GBX2P52951 348 aaPredicted RBP14.82□□□□□ -0.04
LIME1-208ENST00000493265 UCP2P55851 309 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 ODF4Q2M2E3 257 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 SNAI3Q3KNW1 292 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 KCTD21Q4G0X4 260 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 SPNS3Q6ZMD2 512 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 ZNF704Q6ZNC4 412 aaPredicted RBP14.82□□□□□ -0.04
LIME1-208ENST00000493265 KCTD20Q7Z5Y7 419 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 SYS1Q8N2H4 156 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 NANOGP1Q8N7R0 232 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 RORBQ92753 470 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 PPP1R14AQ96A00 147 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 PELI1Q96FA3 418 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 MND1Q9BWT6 205 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 CDCA4Q9BXL8 241 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 POFUT1Q9H488 388 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 R4GMQ9 66 aa14.82□□□□□ -0.04
LIME1-208ENST00000493265 ITPR3Q14573 2671 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 ANKHD1Q8IWZ3 2542 aaKnown RBP14.81□□□□□ -0.04
LIME1-208ENST00000493265 E9PI62 339 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 THBS4P35443 961 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 RGS6P49758 472 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 PRSS12P56730 875 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 PPP1CBP62140 327 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 MED22Q15528 200 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 BCL2L15Q5TBC7 163 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 TMEM200AQ86VY9 491 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 OR52N1Q8NH53 320 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 OR2AE1Q8NHA4 323 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 APOBEC3DQ96AK3 386 aaPredicted RBP14.81□□□□□ -0.04
LIME1-208ENST00000493265 SIGLEC11Q96RL6 698 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 C1QTNF5Q9BXJ0 243 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 FAM206AQ9NX38 181 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 SLC22A13Q9Y226 551 aa14.81□□□□□ -0.04
LIME1-208ENST00000493265 PNMA8CA0A1B0GUJ8 204 aa14.8□□□□□ -0.04
LIME1-208ENST00000493265 TMEM129A0AVI4 362 aa14.8□□□□□ -0.04
LIME1-208ENST00000493265 H3BSH0 61 aa14.8□□□□□ -0.04
LIME1-208ENST00000493265 PCSK6P29122 969 aa14.8□□□□□ -0.04
LIME1-208ENST00000493265 GTF2A1P52655 376 aaPredicted RBP14.8□□□□□ -0.04
LIME1-208ENST00000493265 WNT4P56705 351 aa14.8□□□□□ -0.04
LIME1-208ENST00000493265 IRF3Q14653 427 aa14.8□□□□□ -0.04
LIME1-208ENST00000493265 HLXQ14774 488 aaPredicted RBP14.8□□□□□ -0.04
LIME1-208ENST00000493265 ZNF773Q6PK81 442 aa14.8□□□□□ -0.04
LIME1-208ENST00000493265 UNQ6126/PRO20091Q6UXV3 157 aa14.8□□□□□ -0.04
LIME1-208ENST00000493265 COMMD2Q86X83 199 aa14.8□□□□□ -0.04
LIME1-208ENST00000493265 ZFP41Q8N8Y5 198 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms