RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TIGD4Q8IY51 512 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 LINC01356Q8N9X3 169 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 OR10AD1Q8NGE0 317 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 OR5L1Q8NGL2 311 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 ITLN1Q8WWA0 313 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 LRTOMTQ8WZ04 291 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 ZNF799Q96GE5 643 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 COG8Q96MW5 612 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 ZNF556Q9HAH1 456 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 CENPMQ9NSP4 180 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 CGGBP1Q9UFW8 167 aaPredicted RBP15.33■□□□□ 0.04
COL9A3-214ENST00000490398 KCNS2Q9ULS6 477 aa15.33■□□□□ 0.04
COL9A3-214ENST00000490398 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.32■□□□□ 0.042e-10■■□□□ 12.3
COL9A3-214ENST00000490398 CLDN25C9JDP6 229 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 M0R129 80 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 GLCEO94923 617 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 SELEP16581 610 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 EPHA2P29317 976 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 TPTEP56180 551 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 CHRFAM7AQ494W8 412 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 CPOQ8IVL8 374 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 OR8G5Q8NG78 346 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 OR6N2Q8NGY6 317 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 OR2AE1Q8NHA4 323 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 OR5K1Q8NHB7 308 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 NRBF2Q96F24 287 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 DUS3LQ96G46 650 aaKnown RBP15.32■□□□□ 0.04
COL9A3-214ENST00000490398 OR2V2Q96R30 315 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 EGLN1Q9GZT9 426 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 MARCH7Q9H992 704 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 SLC25A19Q9HC21 320 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 TMEM160Q9NX00 188 aa15.32■□□□□ 0.04
COL9A3-214ENST00000490398 ATRQ13535 2644 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 ANK2Q01484 3957 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 IQCF6A8MYZ5 107 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 SELENOFO60613 162 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 HLA-DPB1P04440 258 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 CRISP1P54107 249 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 ZNF92Q03936 586 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 EIF2B1Q14232 305 aaKnown RBP15.31■□□□□ 0.04
COL9A3-214ENST00000490398 CR1LQ2VPA4 569 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 ZMAT1Q5H9K5 638 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 GLYATL3Q5SZD4 288 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 ZNF283Q8N7M2 679 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 SPTSSAQ969W0 71 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 DIRC2Q96SL1 478 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 INTS14Q96SY0 518 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 SLC30A2Q9BRI3 323 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 COPS4Q9BT78 406 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 ABHD6Q9BV23 337 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 MMADHCQ9H3L0 296 aaPredicted RBP15.31■□□□□ 0.04
COL9A3-214ENST00000490398 PAPOLBQ9NRJ5 636 aaKnown RBP15.31■□□□□ 0.04
COL9A3-214ENST00000490398 KLHDC2Q9Y2U9 406 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 AP4S1Q9Y587 144 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 N6AMT1Q9Y5N5 214 aa15.31■□□□□ 0.04
COL9A3-214ENST00000490398 PRR23D1E9PI22 279 aaPredicted RBP15.3■□□□□ 0.04
COL9A3-214ENST00000490398 F5H5P2 479 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 PRR23D2P0DMB1 279 aaPredicted RBP15.3■□□□□ 0.04
COL9A3-214ENST00000490398 SLC2A5P22732 501 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 SLC6A9P48067 706 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 KLHL12Q53G59 568 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 BCDIN3DQ7Z5W3 292 aaKnown RBP15.3■□□□□ 0.04
COL9A3-214ENST00000490398 ZNF420Q8TAQ5 688 aaPredicted RBP15.3■□□□□ 0.04
COL9A3-214ENST00000490398 ZNF582Q96NG8 517 aaPredicted RBP15.3■□□□□ 0.04
COL9A3-214ENST00000490398 SIGLEC11Q96RL6 698 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 KCNJ15Q99712 375 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 MDFIQ99750 246 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 BEX2Q9BXY8 128 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 SEMA6AQ9H2E6 1030 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 ZNF665Q9H7R5 613 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 TMEM106BQ9NUM4 274 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 TVP23BQ9NYZ1 205 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 KIF17Q9P2E2 1029 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 IL19Q9UHD0 177 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 CDC42EP3Q9UKI2 254 aa15.3■□□□□ 0.04
COL9A3-214ENST00000490398 A0A1B0GWJ7 208 aa15.29■□□□□ 0.04
COL9A3-214ENST00000490398 HMGN1P05114 100 aa15.29■□□□□ 0.04
COL9A3-214ENST00000490398 FASP25445 335 aa15.29■□□□□ 0.04
COL9A3-214ENST00000490398 PMELP40967 661 aa15.29■□□□□ 0.04
COL9A3-214ENST00000490398 NAA10P41227 235 aaPredicted RBP15.29■□□□□ 0.04
COL9A3-214ENST00000490398 HCCSP53701 268 aa15.29■□□□□ 0.04
COL9A3-214ENST00000490398 PTGES3Q15185 160 aaKnown RBP15.29■□□□□ 0.04
COL9A3-214ENST00000490398 RNF133Q8WVZ7 376 aa15.29■□□□□ 0.04
COL9A3-214ENST00000490398 MEGF10Q96KG7 1140 aa15.29■□□□□ 0.04
COL9A3-214ENST00000490398 SHARPINQ9H0F6 387 aa15.29■□□□□ 0.04
COL9A3-214ENST00000490398 GCM1Q9NP62 436 aa15.29■□□□□ 0.04
COL9A3-214ENST00000490398 ZNF319Q9P2F9 582 aa15.29■□□□□ 0.04
COL9A3-214ENST00000490398 CCDC182A6NF36 153 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 ZNF878C9JN71 531 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 G3V2T6 193 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 PRKYO43930 277 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 IGHV2-70P01814 119 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 IGHV2-5P01817 119 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 FAM157CP0CG43 387 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 PAICSP22234 425 aaKnown RBP15.28■□□□□ 0.04
COL9A3-214ENST00000490398 TNFSF4P23510 183 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 BLVRAP53004 296 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 HOXA4Q00056 320 aaPredicted RBP15.28■□□□□ 0.04
COL9A3-214ENST00000490398 MALLQ13021 153 aa15.28■□□□□ 0.04
COL9A3-214ENST00000490398 TAF13Q15543 124 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms