RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 QPRTQ15274 297 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 IRF4Q15306 451 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 RAB11BQ15907 218 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 RPEL1Q2QD12 228 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 TRMT5Q32P41 509 aaKnown RBP1.31□□□□□ -2.2
CPSF3-205ENST00000489629 GPR107Q5VW38 600 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 METTL21CQ5VZV1 264 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 PLCXD3Q63HM9 321 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 NANOGP8Q6NSW7 305 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 NPSR1Q6W5P4 371 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 ASCL4Q6XD76 172 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 OTUD6AQ7L8S5 288 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 SSX9Q7RTT3 188 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 RIMKLAQ8IXN7 391 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 UBALD2Q8IYN6 164 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 NPWQ8N729 165 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 TTC29Q8NA56 475 aaPredicted RBP1.31□□□□□ -2.2
CPSF3-205ENST00000489629 OR51F2Q8NH61 342 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 PIFOQ8TCI5 191 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 C15orf40Q8WUR7 153 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 TOP1MTQ969P6 601 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 EEF1AKMT3Q96AZ1 226 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 NEURL3Q96EH8 262 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 LZTS2Q9BRK4 669 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 UQCC2Q9BRT2 126 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 SPNS1Q9H2V7 528 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 FBXO44Q9H4M3 255 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF355PQ9NSJ1 428 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 FAM49BQ9NUQ9 324 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 MRPL22Q9NWU5 206 aaKnown RBP1.31□□□□□ -2.2
CPSF3-205ENST00000489629 ZNRD1Q9P1U0 126 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 ZMAT5Q9UDW3 170 aaKnown RBP1.31□□□□□ -2.2
CPSF3-205ENST00000489629 TMEM14AQ9Y6G1 99 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 COMMD3-BMI1R4GMX3 469 aa1.31□□□□□ -2.2
CPSF3-205ENST00000489629 TICRRQ7Z2Z1 1910 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 LOXHD1Q8IVV2 1947 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 ARPC4-TTLL3A0A0A6YYG9 625 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 TRAV40A0A0B4J280 105 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 TMEM223A0PJW6 202 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 H7C417 338 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 M0R3G1 203 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 RAD51BO15315 384 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 B4GALT5O43286 388 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 RAD51CO43502 376 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF207O43670 478 aaKnown RBP1.3□□□□□ -2.2
CPSF3-205ENST00000489629 NMT2O60551 498 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 YIF1AO95070 293 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 RCBTB2O95199 551 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 HLA-HP01893 362 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 CTSLP07711 333 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 EIF2S2P20042 333 aaKnown RBP1.3□□□□□ -2.2
CPSF3-205ENST00000489629 TCN2P20062 427 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 RAB3AP20336 220 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 U2AF2P26368 475 aaKnown RBP eCLIP1.3□□□□□ -2.23e-7■■□□□ 12.2
CPSF3-205ENST00000489629 CD82P27701 267 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 HMOX2P30519 316 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 SSTR5P35346 364 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 PEX19P40855 299 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 RFC3P40938 356 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 KIR3DL2P43630 455 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 BCAP31P51572 246 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 P2RX1P51575 399 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 UBE2NP61088 152 aaKnown RBP1.3□□□□□ -2.2
CPSF3-205ENST00000489629 PPP1CBP62140 327 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 SEMG2Q02383 582 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 CDH17Q12864 832 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 TSC22D1Q15714 1073 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 PSMD5Q16401 504 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 KLHL40Q2TBA0 621 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 ORMDL2Q53FV1 153 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 GCSAMLQ5JQS6 135 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 FAM78AQ5JUQ0 283 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF684Q5T5D7 378 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 AVPI1Q5T686 147 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 PRMT9Q6P2P2 845 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 TTC23LQ6PF05 361 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 SPESP1Q6UW49 350 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 BRD3OSQ6XYD6 125 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 PRSS58Q8IYP2 241 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 CMTM8Q8IZV2 173 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 METTL13Q8N6R0 699 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 C11orf72Q8NBR9 251 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 PROKR2Q8NFJ6 384 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 OR52E2Q8NGJ4 325 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 OR4A15Q8NGL6 344 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 CA5BP1Q8WTZ4 195 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 LRRC29Q8WV35 223 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF75CPQ92670 426 aaPredicted RBP1.3□□□□□ -2.2
CPSF3-205ENST00000489629 TMEM230Q96A57 120 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 NTAN1Q96AB6 310 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 APH1AQ96BI3 265 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 CERS2Q96G23 380 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 GSDMAQ96QA5 445 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 CAMK2N2Q96S95 79 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 NAA50Q9GZZ1 169 aaKnown RBP1.3□□□□□ -2.2
CPSF3-205ENST00000489629 HMG20AQ9NP66 347 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 PEF1Q9UBV8 284 aaKnown RBP1.3□□□□□ -2.2
CPSF3-205ENST00000489629 CTSFQ9UBX1 484 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 MTFP1Q9UDX5 166 aa1.3□□□□□ -2.2
CPSF3-205ENST00000489629 YARS2Q9Y2Z4 477 aaKnown RBP1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms