RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 AGPAT4Q9NRZ5 378 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 CCDC59Q9P031 241 aaKnown RBP1.06□□□□□ -2.24
SMC4-220ENST00000488017 SLC17A4Q9Y2C5 497 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 SCN1AP35498 2009 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 ANKRD12Q6UB98 2062 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 IGKV2-24A0A0C4DH68 120 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 A0A0J9YXV3 536 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 TRBV11-1A0A0K0K1C0 115 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 C9JVG2 144 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 NDUFC2-KCTD14E9PQ53 114 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 NDUFAB1O14561 156 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 SLC9A3R1O14745 358 aaPredicted RBP1.05□□□□□ -2.24
SMC4-220ENST00000488017 CHST10O43529 356 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 CHST1O43916 411 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 SLC22A5O76082 557 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 CD74P04233 296 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 CT45A6P0DMU7 189 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 CT45A5P0DMU8 189 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 CT45A7P0DMV0 189 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 MYL2P10916 166 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 CD99P14209 185 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 IL1RNP18510 177 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 CSNK2A2P19784 350 aaPredicted RBP1.05□□□□□ -2.24
SMC4-220ENST00000488017 BCKDHBP21953 392 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 ME2P23368 584 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 RRM2P31350 389 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 POLR2IP36954 125 aaKnown RBP1.05□□□□□ -2.24
SMC4-220ENST00000488017 GFERP55789 205 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 SYNJ2BPP57105 145 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 RAB10P61026 200 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 RBMY1FQ15415 496 aaKnown RBP1.05□□□□□ -2.24
SMC4-220ENST00000488017 PSMD5Q16401 504 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 CT45A1Q5HYN5 189 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 C1orf185Q5T7R7 199 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 ARMC12Q5T9G4 340 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 AP1ARQ63HQ0 302 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 LRRC66Q68CR7 880 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 ADNP2Q6IQ32 1131 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 MBOAT2Q6ZWT7 520 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 FAM71AQ8IYT1 594 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 CBR4Q8N4T8 237 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 CSGALNACT2Q8N6G5 542 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 LRRC52Q8N7C0 313 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 ZNF645Q8N7E2 425 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 TMEM105Q8N8V8 129 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 SNX31Q8N9S9 440 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 CT45A3Q8NHU0 189 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 OR51E1Q8TCB6 317 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 APH1BQ8WW43 257 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 SLC38A4Q969I6 547 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 FAM210AQ96ND0 272 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 MYCBPQ99417 103 aaPredicted RBP1.05□□□□□ -2.24
SMC4-220ENST00000488017 C20orf24Q9BUV8 137 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 CCDC94Q9BW85 323 aaPredicted RBP1.05□□□□□ -2.24
SMC4-220ENST00000488017 TEKT3Q9BXF9 490 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 SAMD10Q9BYL1 202 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 ANKRD60Q9BZ19 345 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 ACTR3CQ9C0K3 210 aaPredicted RBP1.05□□□□□ -2.24
SMC4-220ENST00000488017 C1orf198Q9H425 327 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 TMEM27Q9HBJ8 222 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 SLC17A7Q9P2U7 560 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 ENOPH1Q9UHY7 261 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 SEC16AO15027 2179 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 NINLQ9Y2I6 1382 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 AK9Q5TCS8 1911 aa1.05□□□□□ -2.24
SMC4-220ENST00000488017 COL22A1Q8NFW1 1626 aaPredicted RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 NLRC5Q86WI3 1866 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 TRBV9A0A0B4J1U6 114 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 CENPVL3A0A0U1RRI6 287 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 TRIM64CA6NLI5 447 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 AP3B1O00203 1094 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 SCAMP2O15127 329 aaKnown RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 POLR1CO15160 346 aaPredicted RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 RAD51CO43502 376 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 NMT2O60551 498 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 ERLIN1O75477 346 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 AQP8O94778 261 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 GLSO94925 669 aaPredicted RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 CD160O95971 181 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 CCDC172P0C7W6 258 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 IL32P24001 234 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 CALRP27797 417 aaKnown RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 GTF2E2P29084 291 aaKnown RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 BMI1P35226 326 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 PEX19P40855 299 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 NDUFA8P51970 172 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 TAS2R46P59540 309 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 FLI1Q01543 452 aaPredicted RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 LIPEQ05469 1076 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 NCF4Q15080 339 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 GCSAMLQ5JQS6 135 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 SPIN3Q5JUX0 258 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 CCDC183Q5T5S1 534 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 C16orf87Q6PH81 154 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 CBLN2Q8IUK8 224 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 ST20-AS1Q8NBB2 130 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 OR6Q1Q8NGQ2 317 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 OR9A2Q8NGT5 310 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 OR5K2Q8NHB8 316 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 ANP32BQ92688 251 aaKnown RBP1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms