RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 BHLHE23Q8NDY6 225 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 CCDC74AQ96AQ1 378 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 TWSG1Q9GZX9 223 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 MED29Q9NX70 200 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 SLC17A4Q9Y2C5 497 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 TBX19O60806 448 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 OR2C1O95371 312 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 ELLP55199 621 aaPredicted RBP14.9□□□□□ -0.02
COL7A1-210ENST00000487017 FAM199XQ6PEV8 388 aaPredicted RBP14.9□□□□□ -0.02
COL7A1-210ENST00000487017 C17orf107Q6ZR85 190 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 BAGE3Q86Y29 109 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 BAGE2Q86Y30 109 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 BAP18Q8IXM2 172 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 MARCH1Q8TCQ1 289 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 MVB12AQ96EY5 273 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 ZC3HAV1LQ96H79 300 aaKnown RBP14.9□□□□□ -0.02
COL7A1-210ENST00000487017 ING1Q9UK53 422 aaPredicted RBP14.9□□□□□ -0.02
COL7A1-210ENST00000487017 EXO1Q9UQ84 846 aaKnown RBP14.9□□□□□ -0.02
COL7A1-210ENST00000487017 BTBD17A6NE02 478 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 GPNMBQ14956 572 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 C2CD4CQ8TF44 421 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 GNPNAT1Q96EK6 184 aaPredicted RBP14.9□□□□□ -0.02
COL7A1-210ENST00000487017 OXGR1Q96P68 337 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 PLEKHA2Q9HB19 425 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 NGBQ9NPG2 151 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 NUP205Q92621 2012 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 FER1L6Q2WGJ9 1857 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 A0A087WZY1 265 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 AQP7O14520 342 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 ZNF705AQ6ZN79 300 aaPredicted RBP14.9□□□□□ -0.02
COL7A1-210ENST00000487017 RTL8AQ9BWD3 113 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 ADAM19Q9H013 955 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 TMEM231Q9H6L2 316 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 B9D1Q9UPM9 204 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 TBXA2RP21731 343 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 HOXD11P31277 338 aaPredicted RBP14.9□□□□□ -0.02
COL7A1-210ENST00000487017 FAM53BQ14153 422 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 TMEM178AQ8NBL3 297 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 PPIL1Q9Y3C6 166 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 NHSL1Q5SYE7 1610 aa14.9□□□□□ -0.02
COL7A1-210ENST00000487017 C4orf47A7E2U8 309 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 PRKNO60260 465 aaPredicted RBP14.89□□□□□ -0.03
COL7A1-210ENST00000487017 IGHV3-9P01782 118 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 GLAP06280 429 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 GRPP07492 148 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 CT45A6P0DMU7 189 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 CT45A5P0DMU8 189 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 CT45A7P0DMV0 189 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 CT45A8P0DMV1 189 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 CT45A9P0DMV2 189 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 DEFA4P12838 97 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 TCN2P20062 427 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 PCMT1P22061 227 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 GSK3AP49840 483 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 CT45A2Q5DJT8 189 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 CT45A1Q5HYN5 189 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 SLC35G3Q8N808 338 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 TMEM229BQ8NBD8 167 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 CT45A3Q8NHU0 189 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 C2orf50Q96LR7 162 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 E5RGE8 158 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 GABRA4P48169 554 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 TAF9Q16594 264 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 ST8SIA2Q92186 375 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 PRDM7Q9NQW5 492 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 NSG2Q9Y328 171 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 NRG2O14511 850 aaPredicted RBP14.89□□□□□ -0.03
COL7A1-210ENST00000487017 GALP22466 123 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 GLDNQ6ZMI3 551 aaPredicted RBP14.89□□□□□ -0.03
COL7A1-210ENST00000487017 DND1Q8IYX4 353 aaKnown RBP14.89□□□□□ -0.03
COL7A1-210ENST00000487017 BCL2L11O43521 198 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 IL5P05113 134 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 PI3P19957 117 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 CCL11P51671 97 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 LAIR1Q6GTX8 287 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 H2BFWTQ7Z2G1 175 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 WDR89Q96FK6 387 aaPredicted RBP14.89□□□□□ -0.03
COL7A1-210ENST00000487017 MRGPRX1Q96LB2 322 aa14.89□□□□□ -0.03
COL7A1-210ENST00000487017 TINAGL1Q9GZM7 467 aaPredicted RBP14.89□□□□□ -0.03
COL7A1-210ENST00000487017 DCTN6O00399 190 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 S100A7P31151 101 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 SSX1Q16384 188 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.88□□□□□ -0.03
COL7A1-210ENST00000487017 TMEM240Q5SV17 173 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 ZNF468Q5VIY5 522 aaPredicted RBP14.88□□□□□ -0.03
COL7A1-210ENST00000487017 YRDCQ86U90 279 aaKnown RBP14.88□□□□□ -0.03
COL7A1-210ENST00000487017 FOXJ3Q9UPW0 622 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 ZNF732B4DXR9 585 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 EN2P19622 333 aaPredicted RBP14.88□□□□□ -0.03
COL7A1-210ENST00000487017 ZNF683Q8IZ20 524 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 PPP1R1CQ8WVI7 109 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 MRGPRX4Q96LA9 322 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 F6UZH7 168 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 GLI4P10075 376 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 ZNF239Q16600 458 aaKnown RBP14.88□□□□□ -0.03
COL7A1-210ENST00000487017 TMPRSS11FQ6ZWK6 438 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 NIT2Q9NQR4 276 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 URB1O60287 2271 aaKnown RBP14.88□□□□□ -0.03
COL7A1-210ENST00000487017 USP54Q70EL1 1684 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 GINS3Q9BRX5 216 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms