RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ARRDC1Q8N5I2 433 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 OR4K5Q8NGD3 323 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 DEDD2Q8WXF8 326 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 PEX13Q92968 403 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 PTX4Q96A99 478 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 FLYWCH2Q96CP2 140 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 NRBF2Q96F24 287 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 OPALINQ96PE5 141 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 CAMK2N2Q96S95 79 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 IQCGQ9H095 443 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 MRPL22Q9NWU5 206 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 CLN6Q9NWW5 311 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 SLC39A1Q9NY26 324 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 AHSPQ9NZD4 102 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 MYEF2Q9P2K5 600 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 OPN4Q9UHM6 478 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 PALLDQ8WX93 1383 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 PCDH11XQ9BZA7 1347 aa1.66□□□□□ -2.14
CCDC88A-212ENST00000474059 TSPAN11A1L157 253 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 SYCE1LA8MT33 242 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 H0YIV9 168 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 NME4O00746 187 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 PLPP1O14494 284 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 ZBTB5O15062 677 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 BET1O15155 118 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 SOCS1O15524 211 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 AKR7A2O43488 359 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 CDC40O60508 579 aaKnown RBP eCLIP1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 NMT2O60551 498 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 REM1O75628 298 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 SEMA3DO95025 777 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 CD5P06127 495 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 OR8U9P0C7N5 309 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 LINC00869P0C866 280 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 STAG3L3P0CL85 134 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 MUC1P15941 1255 aaPredicted RBP1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 RAB4AP20338 218 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 RBM34P42696 430 aaKnown RBP1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 RAB7AP51149 207 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 RAD51Q06609 339 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 ART3Q13508 389 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 MOBPQ13875 183 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 NCF4Q15080 339 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 ABCA11PQ4W5N1 156 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 TCEAL5Q5H9L2 206 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 SAXO2Q658L1 398 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 OTUD6AQ7L8S5 288 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 SNX20Q7Z614 316 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 TMCO2Q7Z6W1 182 aaPredicted RBP1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 HORMAD1Q86X24 394 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 APRG1Q8IVJ8 170 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 NKAIN4Q8IVV8 208 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 WDFY1Q8IWB7 410 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 LGI3Q8N145 548 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 GPR26Q8NDV2 337 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 OR6N1Q8NGY5 312 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 GLYATL2Q8WU03 294 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 TCEAL3Q969E4 200 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 RPEQ96AT9 228 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 DCPSQ96C86 337 aaKnown RBP1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 DYNLL2Q96FJ2 89 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 NARS2Q96I59 477 aaKnown RBP1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 JSRP1Q96MG2 331 aaPredicted RBP1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF488Q96MN9 340 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 HSD17B10Q99714 261 aaKnown RBP1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 SPIN2AQ99865 258 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 SPIN2BQ9BPZ2 258 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 UQCC2Q9BRT2 126 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 SLIRPQ9GZT3 109 aaKnown RBP1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 OR52D1Q9H346 318 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 NCOR1P1Q9H4R4 102 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 SLC38A10Q9HBR0 1119 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 MED4Q9NPJ6 270 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 PXMP2Q9NR77 195 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 SLC17A7Q9P2U7 560 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 PSME2Q9UL46 239 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 YARS2Q9Y2Z4 477 aaKnown RBP1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 HYOU1Q9Y4L1 999 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 RFNGQ9Y644 331 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 SAR1BQ9Y6B6 198 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 PTPRTO14522 1441 aa1.65□□□□□ -2.15
CCDC88A-212ENST00000474059 FCGBPQ9Y6R7 5405 aaPredicted RBP1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 COL1A2P08123 1366 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 PLEKHG2Q9H7P9 1386 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 SMIM26A0A096LP01 95 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 TRAV19A0A0A6YYK7 116 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 IGHV1OR15-9A0A0B4J2B8 117 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 A0A1B0GTQ1 180 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 A0A1W2PRD5 423 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 TMEM120BA0PK00 339 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 C5orf63A6NC05 138 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 GABRPO00591 440 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 BPY2O14599 106 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 CASC3O15234 703 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 ERI3O43414 337 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 HLA-DQA1P01909 254 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 KRT16P08779 473 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 PGA4P0DJD7 388 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 PGA3P0DJD8 388 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 PGA5P0DJD9 388 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms