RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 OTX1P32242 354 aaPredicted RBP11.31□□□□□ -0.6
CHD3-209ENST00000473376 PITPNBP48739 271 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 TPTEP56180 551 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 MZT1Q08AG7 82 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 GK2Q14410 553 aaPredicted RBP11.31□□□□□ -0.6
CHD3-209ENST00000473376 C16orf87Q6PH81 154 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 OR5AS1Q8N127 324 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 LINC00471Q8N535 108 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 SPERTQ8NA61 448 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 OR10AD1Q8NGE0 317 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 PYURFQ96I23 114 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 ZNF48Q96MX3 618 aaPredicted RBP11.31□□□□□ -0.6
CHD3-209ENST00000473376 PITX2Q99697 317 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 CDADC1Q9BWV3 514 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 MYLK2Q9H1R3 596 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 OR52D1Q9H346 318 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 OPA3Q9H6K4 179 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 GMPR2Q9P2T1 348 aaKnown RBP11.31□□□□□ -0.6
CHD3-209ENST00000473376 CLN8Q9UBY8 286 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 CD300AQ9UGN4 299 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 ARHGAP32A7KAX9 2087 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 MEGF8Q7Z7M0 2845 aa11.31□□□□□ -0.6
CHD3-209ENST00000473376 F5H5P2 479 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 WIPF1O43516 503 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 ENSAO43768 121 aaKnown RBP11.3□□□□□ -0.6
CHD3-209ENST00000473376 KRT36O76013 467 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 GADD45GO95257 159 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 HSD17B1P14061 328 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 NOS3P29474 1203 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 GGT2P36268 569 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 GSSP48637 474 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 HMGA2P52926 109 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 TRAP1Q12931 704 aaKnown RBP11.3□□□□□ -0.6
CHD3-209ENST00000473376 MAB21L1Q13394 359 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 HSP90B2PQ58FF3 399 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 WDR25Q64LD2 544 aaPredicted RBP11.3□□□□□ -0.6
CHD3-209ENST00000473376 ZNF841Q6ZN19 808 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 PGAP1Q75T13 922 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 ZNF771Q7L3S4 317 aaPredicted RBP11.3□□□□□ -0.6
CHD3-209ENST00000473376 MOGAT3Q86VF5 341 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 BCL6BQ8N143 479 aaPredicted RBP11.3□□□□□ -0.6
CHD3-209ENST00000473376 FITM2Q8N6M3 262 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 ZNF420Q8TAQ5 688 aaPredicted RBP11.3□□□□□ -0.6
CHD3-209ENST00000473376 FANK1Q8TC84 345 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 SPTSSAQ969W0 71 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 TSSK2Q96PF2 358 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 NMNAT3Q96T66 252 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 NUDT16L1Q9BRJ7 211 aaKnown RBP11.3□□□□□ -0.6
CHD3-209ENST00000473376 SRA1Q9HD15 236 aaKnown RBP11.3□□□□□ -0.6
CHD3-209ENST00000473376 PNRC2Q9NPJ4 139 aaKnown RBP11.3□□□□□ -0.6
CHD3-209ENST00000473376 MRPL15Q9P015 296 aaKnown RBP11.3□□□□□ -0.6
CHD3-209ENST00000473376 MAGEL2Q9UJ55 1249 aa11.3□□□□□ -0.6
CHD3-209ENST00000473376 H0YL77 283 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 P2RY10O00398 339 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 CYB5R3P00387 301 aaPredicted RBP11.29□□□□□ -0.6
CHD3-209ENST00000473376 IGHV4-38-2P0DP08 117 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 NCK1P16333 377 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 HIST1H1CP16403 213 aaKnown RBP11.29□□□□□ -0.6
CHD3-209ENST00000473376 PMELP40967 661 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 TSPAN31Q12999 210 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 CLEC12AQ5QGZ9 265 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 DRAM2Q6UX65 266 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 CFAP77Q6ZQR2 320 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 OR4C15Q8NGM1 316 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 MCUR1Q96AQ8 359 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 FAM71F1Q96KD3 344 aaPredicted RBP11.29□□□□□ -0.6
CHD3-209ENST00000473376 DDOQ99489 341 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 IFT27Q9BW83 186 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 NSRP1Q9H0G5 558 aaKnown RBP11.29□□□□□ -0.6
CHD3-209ENST00000473376 UNKLQ9H9P5 680 aaKnown RBP11.29□□□□□ -0.6
CHD3-209ENST00000473376 FN3KRPQ9HA64 309 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 IL1RAPQ9NPH3 570 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 KIF17Q9P2E2 1029 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 POMT1Q9Y6A1 747 aa11.29□□□□□ -0.6
CHD3-209ENST00000473376 PKD1L1Q8TDX9 2849 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 SRRM5B3KS81 715 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 F5H5K5 113 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 TNFRSF13BO14836 293 aaPredicted RBP11.28□□□□□ -0.6
CHD3-209ENST00000473376 ECDO95905 644 aaPredicted RBP11.28□□□□□ -0.6
CHD3-209ENST00000473376 LCATP04180 440 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 DDOSTP39656 456 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 CENPAP49450 140 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 BLVRAP53004 296 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 MEP1BQ16820 701 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 PCK2Q16822 640 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 GPR157Q5UAW9 335 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 CORO6Q6QEF8 472 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 Q6YL49 198 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 ZNF620Q6ZNG0 422 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 RHOUQ7L0Q8 258 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 OR4K13Q8NH42 304 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 OR52J3Q8NH60 311 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 GNPDA2Q8TDQ7 276 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 SPRYD4Q8WW59 207 aaPredicted RBP11.28□□□□□ -0.6
CHD3-209ENST00000473376 RPRD1BQ9NQG5 326 aaKnown RBP11.28□□□□□ -0.6
CHD3-209ENST00000473376 IL20Q9NYY1 176 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 ERVK-18Q9QC07 812 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 RNF7Q9UBF6 113 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 TMCC3Q9ULS5 477 aa11.28□□□□□ -0.6
CHD3-209ENST00000473376 TRAV38-1A0A0B4J264 116 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms