RNA–Protein interactions for RNA: ENST00000471880.5

SSR4-208, Transcript of signal sequence receptor subunit 4, human

TSL 5

Gene SSR4, Length 785 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSR4-208	ENST00000471880	GAL3ST1	Q99999	423 aa		12.57	□□□□□ -0.4
SSR4-208	ENST00000471880	PAPOLB	Q9NRJ5	636 aa	Known RBP	12.57	□□□□□ -0.4
SSR4-208	ENST00000471880	LPAR3	Q9UBY5	353 aa		12.57	□□□□□ -0.4
SSR4-208	ENST00000471880	WIPI2	Q9Y4P8	454 aa		12.57	□□□□□ -0.4
SSR4-208	ENST00000471880	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	12.56	□□□□□ -0.4
SSR4-208	ENST00000471880		J3QW42	95 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	TBX1	O43435	398 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	IFNA2	P01563	188 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	HMGN1	P05114	100 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	SLC2A1	P11166	492 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	PSKH1	P11801	424 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	CDK5R2	Q13319	367 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	CR1L	Q2VPA4	569 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	SPRN	Q5BIV9	151 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	FAM120AOS	Q5T036	256 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	CCDC121	Q6ZUS5	278 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	PGAP1	Q75T13	922 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	GLCCI1	Q86VQ1	547 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	PAPD5	Q8NDF8	572 aa	Known RBP	12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	OR2V2	Q96R30	315 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	PNRC2	Q9NPJ4	139 aa	Known RBP	12.56	□□□□□ -0.4
SSR4-208	ENST00000471880	TANC2	Q9HCD6	1990 aa		12.56	□□□□□ -0.4
SSR4-208	ENST00000471880		B4DSR2	109 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	ZNF878	C9JN71	531 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	GLCE	O94923	617 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	ANXA2	P07355	339 aa	Known RBP	12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	SBK2	P0C263	348 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	SELE	P16581	610 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	SRD5A1	P18405	259 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	FAS	P25445	335 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	SRP14	P37108	136 aa	Known RBP	12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	RBMX	P38159	391 aa	Known RBP	12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	RAD23A	P54725	363 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	SNAPC1	Q16533	368 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	FBXW12	Q6X9E4	464 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880		Q6ZR03	302 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	DPY19L4	Q7Z388	723 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	AMIGO2	Q86SJ2	522 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	OR8G5	Q8NG78	346 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	OR10S1	Q8NGN2	331 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	OR13G1	Q8NGZ3	307 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	OR2AE1	Q8NHA4	323 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	OR5K1	Q8NHB7	308 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	RAB39B	Q96DA2	213 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	C1QTNF5	Q9BXJ0	243 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	NMNAT2	Q9BZQ4	307 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	MMADHC	Q9H3L0	296 aa	Predicted RBP	12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	ZNF665	Q9H7R5	613 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	BRD7	Q9NPI1	651 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	KRT84	Q9NSB2	600 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	TVP23B	Q9NYZ1	205 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	DNAJC27	Q9NZQ0	273 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	PCDHB10	Q9UN67	800 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	PPP1R3C	Q9UQK1	317 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	AP4S1	Q9Y587	144 aa		12.55	□□□□□ -0.4
SSR4-208	ENST00000471880	ARHGAP32	A7KAX9	2087 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	GGT3P	A6NGU5	568 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	FAM157A	C9JC47	383 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880		G3V2T6	193 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880		H0YL77	283 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	HLA-DPB1	P04440	258 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	NAA10	P41227	235 aa	Predicted RBP	12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	SLC15A1	P46059	708 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	CX3CR1	P49238	355 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	GK2	Q14410	553 aa	Predicted RBP	12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	RSPO1	Q2MKA7	263 aa	Predicted RBP	12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	GFOD2	Q3B7J2	385 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	SNAI3	Q3KNW1	292 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	CXXC5	Q7LFL8	322 aa	Known RBP	12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	CPO	Q8IVL8	374 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	OR51F2	Q8NH61	342 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	THEM6	Q8WUY1	208 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	KCNJ15	Q99712	375 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	SEMA6A	Q9H2E6	1030 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	NTN4	Q9HB63	628 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	TMEM106B	Q9NUM4	274 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	TMEM100	Q9NV29	134 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	DCAF16	Q9NXF7	216 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	IL19	Q9UHD0	177 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	TMEFF2	Q9UIK5	374 aa	Predicted RBP	12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	DNHD1	Q96M86	4753 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	COL6A5	A8TX70	2615 aa		12.54	□□□□□ -0.4
SSR4-208	ENST00000471880	WNK2	Q9Y3S1	2297 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880		F5H5P2	479 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	SELENOF	O60613	162 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	MSMB	P08118	114 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	CD55	P08174	381 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	ADH4	P08319	380 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	H2BFM	P0C1H6	154 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	FAM157C	P0CG43	387 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	SRP9	P49458	86 aa	Known RBP	12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	DAP	P51397	102 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	CRISP1	P54107	249 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	ATP6AP1	Q15904	470 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	TIGD6	Q17RP2	521 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	LINC01590	Q5TEZ4	76 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	DRAM2	Q6UX65	266 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	SHF	Q7M4L6	423 aa		12.53	□□□□□ -0.4
SSR4-208	ENST00000471880	ZDHHC13	Q8IUH4	622 aa		12.53	□□□□□ -0.4

Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms