RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 BEX1Q9HBH7 125 aa18.81■□□□□ 0.6
USP4-208ENST00000464168 NOX4Q9NPH5 578 aa18.81■□□□□ 0.6
USP4-208ENST00000464168 B9D1Q9UPM9 204 aa18.81■□□□□ 0.6
USP4-208ENST00000464168 FAM20BO75063 409 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 ACSM4P0C7M7 580 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 IRF2P14316 349 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 CD200P41217 278 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 RPS6KA3P51812 740 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 RAD23AP54725 363 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 RAG2P55895 527 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 HOXA4Q00056 320 aaPredicted RBP18.8■□□□□ 0.6
USP4-208ENST00000464168 SEC23BQ15437 767 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 MPPED2Q15777 294 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 FIP1L1Q6UN15 594 aaKnown RBP18.8■□□□□ 0.6
USP4-208ENST00000464168 NAA40Q86UY6 237 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 OR6V1Q8N148 313 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 OR4F5Q8NH21 305 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 CHIAQ9BZP6 476 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 SRA1Q9HD15 236 aaKnown RBP18.8■□□□□ 0.6
USP4-208ENST00000464168 C1RLQ9NZP8 487 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 NDUFAF4Q9P032 175 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 TMCC3Q9ULS5 477 aa18.8■□□□□ 0.6
USP4-208ENST00000464168 TRBV4-1A0A0J9YWV2 114 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 UNC119BA6NIH7 251 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 SLC22A2O15244 555 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 ENSAO43768 121 aaKnown RBP18.79■□□□□ 0.6
USP4-208ENST00000464168 CRYBA1P05813 215 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 SFTPBP07988 381 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 MDH1P40925 334 aaKnown RBP18.79■□□□□ 0.6
USP4-208ENST00000464168 GSK3BP49841 420 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 SLC7A2P52569 658 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 FGD3Q5JSP0 725 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 RUSC1-AS1Q66K80 236 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 DNM1P34Q6PK57 102 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 CFAP77Q6ZQR2 320 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 SLC26A10Q8NG04 563 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 OR11L1Q8NGX0 322 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 RP9Q8TA86 221 aaKnown RBP18.79■□□□□ 0.6
USP4-208ENST00000464168 PCGF1Q9BSM1 259 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 UFSP2Q9NUQ7 469 aa18.79■□□□□ 0.6
USP4-208ENST00000464168 F5H5K5 113 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 NDUFA7O95182 113 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 PPP1R3DO95685 299 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 NCK1P16333 377 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 CFHR2P36980 270 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 PRAMEF6Q5VXH4 476 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 OLFML2AQ68BL7 652 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 SLC18B1Q6NT16 456 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 C8orf82Q6P1X6 216 aaPredicted RBP18.78■□□□□ 0.6
USP4-208ENST00000464168 SMARCD3Q6STE5 483 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 C17orf107Q6ZR85 190 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 LINC00346Q8IVM7 164 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 TMEM86BQ8N661 226 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 SLCO4A1Q96BD0 722 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 C7orf34Q96L11 122 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 ERMAPQ96PL5 475 aaPredicted RBP18.78■□□□□ 0.6
USP4-208ENST00000464168 PITX2Q99697 317 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 CITED1Q99966 193 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 HOPXQ9BPY8 73 aaPredicted RBP18.78■□□□□ 0.6
USP4-208ENST00000464168 CTSZQ9UBR2 303 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 AURKCQ9UQB9 309 aa18.78■□□□□ 0.6
USP4-208ENST00000464168 FAM32AQ9Y421 112 aaKnown RBP18.78■□□□□ 0.6
USP4-208ENST00000464168 TNFRSF13BO14836 293 aaPredicted RBP18.77■□□□□ 0.6
USP4-208ENST00000464168 MELTFP08582 738 aa18.77■□□□□ 0.6
USP4-208ENST00000464168 MMP9P14780 707 aa18.77■□□□□ 0.6
USP4-208ENST00000464168 RHCEP18577 417 aa18.77■□□□□ 0.6
USP4-208ENST00000464168 NPY4RP50391 375 aa18.77■□□□□ 0.6
USP4-208ENST00000464168 ECH1Q13011 328 aa18.77■□□□□ 0.6
USP4-208ENST00000464168 FAM162AQ96A26 154 aa18.77■□□□□ 0.6
USP4-208ENST00000464168 FAM71F1Q96KD3 344 aaPredicted RBP18.77■□□□□ 0.6
USP4-208ENST00000464168 TECTBQ96PL2 329 aa18.77■□□□□ 0.6
USP4-208ENST00000464168 TBX15Q96SF7 602 aa18.77■□□□□ 0.6
USP4-208ENST00000464168 NMNAT3Q96T66 252 aa18.77■□□□□ 0.6
USP4-208ENST00000464168 FUZQ9BT04 418 aa18.77■□□□□ 0.6
USP4-208ENST00000464168 PNRC2Q9NPJ4 139 aaKnown RBP18.77■□□□□ 0.6
USP4-208ENST00000464168 CENPVL3A0A0U1RRI6 287 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 ZNF879B4DU55 563 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 P2RY10O00398 339 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 LCATP04180 440 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 COX4I1P13073 169 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 TRAP1Q12931 704 aaKnown RBP18.76■□□□□ 0.59
USP4-208ENST00000464168 MALLQ13021 153 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 CD276Q5ZPR3 534 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 PGAP1Q75T13 922 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 RHOUQ7L0Q8 258 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 SPRYD4Q8WW59 207 aaPredicted RBP18.76■□□□□ 0.59
USP4-208ENST00000464168 DHRS1Q96LJ7 313 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 ATF6BQ99941 703 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 RNF7Q9UBF6 113 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 CYB5R1Q9UHQ9 305 aa18.76■□□□□ 0.59
USP4-208ENST00000464168 CLPSL1A2RUU4 121 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 LGALS8O00214 317 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 TOX4O94842 621 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 DIRAS1O95057 198 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 LIPFP07098 398 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 CA6P23280 308 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 GGT2P36268 569 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 OR8G1Q15617 311 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 RFX4Q33E94 735 aa18.75■□□□□ 0.59
USP4-208ENST00000464168 SFRP4Q6FHJ7 346 aaPredicted RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms