RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 ZNF420Q8TAQ5 688 aaPredicted RBP11.74□□□□□ -0.53
USP4-206ENST00000461553 POP5Q969H6 163 aaKnown RBP11.74□□□□□ -0.53
USP4-206ENST00000461553 CCDC124Q96CT7 223 aaKnown RBP11.74□□□□□ -0.53
USP4-206ENST00000461553 ZNF799Q96GE5 643 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 NSL1Q96IY1 281 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 LRGUKQ96M69 825 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 CCT8L2Q96SF2 557 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 TMEM100Q9NV29 134 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 IL20Q9NYY1 176 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 OR5V1Q9UGF6 321 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 BAIAP2Q9UQB8 552 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 LRCH1Q9Y2L9 728 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 SAMHD1Q9Y3Z3 626 aaKnown RBP11.74□□□□□ -0.53
USP4-206ENST00000461553 COMMD3-BMI1R4GMX3 469 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 U3KQV3 271 aa11.74□□□□□ -0.53
USP4-206ENST00000461553 TVP23AA6NH52 213 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 CEACAM18A8MTB9 384 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 F5H0A9 414 aaPredicted RBP11.73□□□□□ -0.53
USP4-206ENST00000461553 F5H5P2 479 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 TRIM77I1YAP6 450 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 SOX14O95416 240 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 FAM107AO95990 144 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 IFNGP01579 166 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 SPARCP09486 303 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 IRF2P14316 349 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 RBMXP38159 391 aaKnown RBP11.73□□□□□ -0.53
USP4-206ENST00000461553 RPS27P42677 84 aaKnown RBP11.73□□□□□ -0.53
USP4-206ENST00000461553 RAD23AP54725 363 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 PRSS12P56730 875 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 SEC61A1P61619 476 aaKnown RBP11.73□□□□□ -0.53
USP4-206ENST00000461553 TRIM25Q14258 630 aaKnown RBP11.73□□□□□ -0.53
USP4-206ENST00000461553 GK2Q14410 553 aaPredicted RBP11.73□□□□□ -0.53
USP4-206ENST00000461553 OR2T5Q6IEZ7 315 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 ZNF770Q6IQ21 691 aaPredicted RBP11.73□□□□□ -0.53
USP4-206ENST00000461553 MOGAT3Q86VF5 341 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 LNX2Q8N448 690 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 SLC37A3Q8NCC5 494 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 OR2T33Q8NG76 320 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 OR9Q1Q8NGQ5 310 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 OR2T29Q8NH02 315 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 SPRYD4Q8WW59 207 aaPredicted RBP11.73□□□□□ -0.53
USP4-206ENST00000461553 MAP6Q96JE9 813 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 SLC6A7Q99884 636 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 COPS4Q9BT78 406 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 MRI1Q9BV20 369 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 TSSK6Q9BXA6 273 aa11.73□□□□□ -0.53
USP4-206ENST00000461553 DDX28Q9NUL7 540 aaKnown RBP11.73□□□□□ -0.53
USP4-206ENST00000461553 PRPF19Q9UMS4 504 aaKnown RBP11.73□□□□□ -0.53
USP4-206ENST00000461553 NOP16Q9Y3C1 178 aaKnown RBP11.73□□□□□ -0.53
USP4-206ENST00000461553 IGHV3-64DA0A0J9YX35 117 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 H0YL77 283 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 CYB5R3P00387 301 aaPredicted RBP11.72□□□□□ -0.53
USP4-206ENST00000461553 GASTP01350 101 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 ZNF3P17036 446 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 ZFP36P26651 326 aaKnown RBP11.72□□□□□ -0.53
USP4-206ENST00000461553 ENTPD1P49961 510 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 PPP1R8Q12972 351 aaKnown RBP11.72□□□□□ -0.53
USP4-206ENST00000461553 CRMP1Q14194 572 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 ZNF181Q2M3W8 571 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 RSPO1Q2MKA7 263 aaPredicted RBP11.72□□□□□ -0.53
USP4-206ENST00000461553 C12orf54Q6X4T0 127 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 DCXRQ7Z4W1 244 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 DEFB108BQ8NET1 73 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 OR10G2Q8NGC3 310 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 OR51L1Q8NGJ5 315 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 OR6K6Q8NGW6 343 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 TEX47Q8TBZ9 253 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 SLCO4A1Q96BD0 722 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 ASB9Q96DX5 294 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 ADAT1Q9BUB4 502 aaKnown RBP11.72□□□□□ -0.53
USP4-206ENST00000461553 RBM4Q9BWF3 364 aaKnown RBP11.72□□□□□ -0.53
USP4-206ENST00000461553 SSBP3Q9BWW4 388 aaPredicted RBP11.72□□□□□ -0.53
USP4-206ENST00000461553 DGCR6LQ9BY27 220 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 ARMC1Q9NVT9 282 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 VNN3Q9NY84 501 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 OPN4Q9UHM6 478 aa11.72□□□□□ -0.53
USP4-206ENST00000461553 POLR3KQ9Y2Y1 108 aaPredicted RBP11.72□□□□□ -0.53
USP4-206ENST00000461553 TENM1Q9UKZ4 2725 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 RIIAD1A6NNX1 92 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 ZNF878C9JN71 531 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 FSHBP01225 129 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 HLA-DPB1P04440 258 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 RAP2AP10114 183 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 ZNF12P17014 697 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 CPT2P23786 658 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 FPR2P25090 351 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 FMO3P31513 532 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 GATA4P43694 442 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 ZNF154Q13106 437 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 GK3PQ14409 553 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 TAF13Q15543 124 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 OR8G1Q15617 311 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 MICAQ29983 383 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 LYPD4Q6UWN0 246 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 DRAM2Q6UX65 266 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 NLRC3Q7RTR2 1065 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 CELF2-AS1Q8N7Q2 184 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 OR10S1Q8NGN2 331 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 OR11L1Q8NGX0 322 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 OR4Q3Q8NH05 313 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms