RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 SCRN3Q0VDG4 424 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 CDK5R1Q15078 307 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 ARL9Q6T311 187 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 SLC16A12Q6ZSM3 486 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 CATSPERDQ86XM0 798 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 C1orf162Q8NEQ5 155 aaPredicted RBP9.53□□□□□ -0.88
SCN9A-205ENST00000454569 OR2G2Q8NGZ5 317 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 RPS4Y2Q8TD47 263 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 TMEM203Q969S6 136 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 POM121L2Q96KW2 1035 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 KCNJ15Q99712 375 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 ACTR6Q9GZN1 396 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 OR51E2Q9H255 320 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 KCNN2Q9H2S1 579 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 RNF167Q9H6Y7 350 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 PTTG2Q9NZH5 202 aa9.53□□□□□ -0.88
SCN9A-205ENST00000454569 TMEM269A0A1B0GVZ9 245 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 OR4C45A6NMZ5 311 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 CCRL2O00421 344 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 ZNF254O75437 659 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 ZFPL1O95159 310 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 UBL3O95164 117 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 GABARAPO95166 117 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 ACSM4P0C7M7 580 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 GADD45AP24522 165 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 CALRP27797 417 aaKnown RBP9.52□□□□□ -0.89
SCN9A-205ENST00000454569 CX3CR1P49238 355 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 IDH3GP51553 393 aaPredicted RBP9.52□□□□□ -0.89
SCN9A-205ENST00000454569 ZNF121P58317 390 aaPredicted RBP9.52□□□□□ -0.89
SCN9A-205ENST00000454569 UBE2NP61088 152 aaKnown RBP9.52□□□□□ -0.89
SCN9A-205ENST00000454569 PCBD1P61457 104 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 RPS11P62280 158 aaKnown RBP eCLIP9.52□□□□□ -0.89
SCN9A-205ENST00000454569 ALKBH1Q13686 389 aaKnown RBP9.52□□□□□ -0.89
SCN9A-205ENST00000454569 TAF13Q15543 124 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 SNAI3Q3KNW1 292 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 DEGS2Q6QHC5 323 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 KCTD20Q7Z5Y7 419 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.52□□□□□ -0.89
SCN9A-205ENST00000454569 ZNF283Q8N7M2 679 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 OR51A4Q8NGJ6 313 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 C4orf45Q96LM5 186 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 BCL7BQ9BQE9 202 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 HDHD2Q9H0R4 259 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 ISYNA1Q9NPH2 558 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 ELOVL5Q9NYP7 299 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 COQ3Q9NZJ6 369 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 GTF2A1LQ9UNN4 478 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 R4GMQ9 66 aa9.52□□□□□ -0.89
SCN9A-205ENST00000454569 HRNRQ86YZ3 2850 aaPredicted RBP9.52□□□□□ -0.89
SCN9A-205ENST00000454569 IGHV1-18A0A0C4DH31 117 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 TRBV2A0A0J9YWF9 115 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 C16orf97H3BN30 126 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 PLPP2O43688 288 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 LMX1BO60663 402 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 GPX5O75715 221 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 NGFP01138 241 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 IGKV3-15P01624 115 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 TTRP02766 147 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 TACSTD2P09758 323 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 EPXP11678 715 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 CBR1P16152 277 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 CCNOP22674 350 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 STOMP27105 288 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 HSD11B1P28845 292 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 ARR3P36575 388 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 WNT5AP41221 380 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 CRYBB2P43320 205 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 ASCL1P50553 236 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 FABP5Q01469 135 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 SLC25A35Q3KQZ1 300 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 TMEM53Q6P2H8 277 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 FDX2Q6P4F2 183 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 FAM57BQ71RH2 274 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 RHOUQ7L0Q8 258 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 FAM220AQ7Z4H9 259 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 ZNF101Q8IZC7 436 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 OR8B12Q8NGG6 310 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 CA5BP1Q8WTZ4 195 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 GHSRQ92847 366 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 ORAI1Q96D31 301 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 ZC3HAV1LQ96H79 300 aaKnown RBP9.51□□□□□ -0.89
SCN9A-205ENST00000454569 LYZL4Q96KX0 146 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 WFIKKN1Q96NZ8 548 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 TSC22D3Q99576 134 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 COQ7Q99807 217 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 TMED9Q9BVK6 235 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 PBOV1Q9GZY1 135 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 PPIL3Q9H2H8 161 aaKnown RBP9.51□□□□□ -0.89
SCN9A-205ENST00000454569 POFUT1Q9H488 388 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 TRIM36Q9NQ86 728 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 ABCA4P78363 2273 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 SPTAN1Q13813 2472 aaKnown RBP9.51□□□□□ -0.89
SCN9A-205ENST00000454569 TENM4Q6N022 2769 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 LRBAP50851 2863 aa9.51□□□□□ -0.89
SCN9A-205ENST00000454569 C5orf49A4QMS7 147 aa9.5□□□□□ -0.89
SCN9A-205ENST00000454569 LOC110117498-PIK3R3F6TDL0 507 aa9.5□□□□□ -0.89
SCN9A-205ENST00000454569 C19orf84I3L1E1 186 aa9.5□□□□□ -0.89
SCN9A-205ENST00000454569 M0R135 149 aa9.5□□□□□ -0.89
SCN9A-205ENST00000454569 P2RY10O00398 339 aa9.5□□□□□ -0.89
SCN9A-205ENST00000454569 AIREO43918 545 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms